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Table 4 Differential expression obtained from RNAseq data for selected genes in non-challenged udder samples compared to E. coli challenged samples

From: Development and evaluation of a milk protein transcript depletion method for differential transcriptome analysis in mammary gland tissue

Gene

q-value1

02

A2

B2

IL6

0.092

0.019

0.002

CCL20

0.662

0.289

0.002

CCL16

0.057

0.019

0.004

TREM1

0.096

0.036

0.002

CCR2

0.189

0.200

0.022

CCR7

0.124

0.051

0.024

  1. 1 Statistical significance (q value) for differential expression between infected and non-infected samples
  2. 2Udder tissue samples without RNA depletion (0), with RNA depletion according to variants A (A) and B (B). Variants A and B differ in antisense oligonucleotide input for depletion (see Materials and Methods)
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BMC Genomics

ISSN: 1471-2164

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