Table 3 Summary of runs of homozygosity (ROH), pools of ROH, FST SNP windows, and FST INDEL windows by chromosome in TT population in all animals from 7th and 16th generations
From: Identification of selection signatures involved in performance traits in a paternal broiler line
GGA | Size (Mb) | Number of ROH | Number of pools | Number of FST SNP windows (≥ 0.3) | Number of FST INDEL windows (≥ 0.3) |
|---|---|---|---|---|---|
1 | 196.20 | 1230 | 415 | 53 | 65 |
2 | 149.56 | 1087 | 338 | 28 | 28 |
3 | 111.30 | 609 | 228 | 28 | 23 |
4 | 91.28 | 582 | 212 | 5 | 4 |
5 | 59.83 | 392 | 137 | 6 | 9 |
6 | 35.47 | 211 | 77 | 4 | 5 |
7 | 36.95 | 267 | 85 | 17 | 21 |
8 | 29.96 | 213 | 66 | 1 | 2 |
9 | 24.09 | 106 | 39 | 6 | 10 |
10 | 20.44 | 106 | 39 | – | 2 |
11 | 20.22 | 114 | 36 | 1 | 1 |
12 | 19.95 | 90 | 41 | – | – |
13 | 18.41 | 107 | 35 | 1 | 2 |
14 | 15.60 | 101 | 32 | – | 1 |
15 | 12.76 | 81 | 32 | – | – |
17 | 10.96 | 72 | 22 | – | – |
18 | 11.05 | 87 | 28 | 1 | – |
19 | 9.98 | 61 | 16 | – | 2 |
20 | 14.11 | 54 | 19 | – | – |
21 | 6.86 | 26 | 7 | – | – |
22 | 4.73 | 13 | 4 | 2 | 3 |
23 | 5.79 | 21 | 7 | 1 | – |
24 | 6.28 | 30 | 12 | – | – |
25 | 2.91 | 7 | 1 | – | – |
26 | 5.31 | 9 | 1 | – | – |
27 | 5.66 | 16 | 5 | – | – |
28 | 4.97 | 25 | 6 | – | – |
33 | 1.65 | 4 | 1 | – | – |