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Table 1 Centroid correlation for the potential discordant sample calls

From: Breast cancer PAM50 signature: correlation and concordance between RNA-Seq and digital multiplexed gene expression technologies in a triple negative breast cancer series

  1. These measures are extracted from the PAM50 assay outcome (Additional file 1: Table S1). The sample’s subtype classification is assigned to the centroid with the highest correlation (in bold red). When the second centroid has a value close to the highest one (difference less or equal to 0.1) the classification is ambiguous being possible any of both subtypes (bold *). The Discordance column summarizes whether a real discordance is observed in a sample or just a scenario where two centroid correlations are almost equivalent (HUGM-0047 in NanoString nCounter® is a paradigmatic case)
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BMC Genomics

ISSN: 1471-2164

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