Table 2 COG categorization of E. alkalisoli YIC4027 CDSs
COG functional categories | CDSs | % of CDSs |
|---|---|---|
Metabolism | ||
 C-Energy production and conversion | 298 | 4.95 |
 E-Amino acid transport and metabolism | 557 | 9.25 |
 F-Nucleotide transport and metabolism | 86 | 1.43 |
 G-Carbohydrate transport and metabolism | 438 | 7.27 |
 H-Coenzyme metabolism | 158 | 2.62 |
 I-Lipid metabolism | 139 | 2.31 |
 P-Inorganic ion transport and metabolism | 181 | 3.00 |
 Q-Secondary metabolites biosynthesis, transport, and catabolism | 113 | 1.88 |
Cellular processes and signaling | ||
 D-Cell division and chromosome partitioning | 32 | 0.53 |
 M-Cell envelope biogenesis, outer membrane | 229 | 3.80 |
 N-Cell motility and secretion | 77 | 1.28 |
 O-Post-translational modification, protein turnover, chaperones | 175 | 2.91 |
 T-Signal transduction mechanisms | 184 | 3.05 |
 U-Intracellular trafficking and secretion | 91 | 1.51 |
 V-Defense mechanisms | 54 | 0.90 |
Information storage and processing | ||
 B-Chromatin structure and dynamics | 2 | 0.03 |
 J-Translation, ribosomal structure and biogenesis | 169 | 2.81 |
 K-Transcription | 382 | 6.34 |
 L-DNA replication, recombination, and repair | 193 | 3.20 |
Pooly characterized | ||
 R-General function prediction only | 492 | 8.17 |
 S-Function unknown | 505 | 8.38 |
Total | 4555 | 75.61 |