Table 2 Statistics for the effects of variants
From: Mitochondrial genome in Hypsizygus marmoreus and its evolution in Dikarya
Region of variants | Effect of variants | Impact level | Count | Percent |
|---|---|---|---|---|
Exon | Frameshift variant | High | 4 | 0.21% |
Stop lost | High | 1 | 0.05% | |
Conservative inframe deletion | Moderate | 1 | 0.05% | |
Conservative inframe insertion | Moderate | 1 | 0.05% | |
Missense variant | Moderate | 18 | 0.93% | |
Synonymous variant | Low | 50 | 2.58% | |
Non coding transcript exon variant | Modifier | 116 | 5.98% | |
Intron | Intron variant | Modifier | 139 | 7.16% |
Intergenic | Intergenic region | Modifier | 1189 | 61.26% |
500 bp upstream of gene | Modifier | 210 | 10.82% | |
500 bp downstream of gene | Modifier | 212 | 10.92% | |
Total | – | – | 1941 | 100.00% |