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Table 1 F2, PH207, and C103 de novo assembly metrics

From: High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array

Maize line

Number of scaffolds

Min size

Max size

Average size

N50

Total (Mb)

% of Ns

Complete BUSCOs (C)

Fragmented BUSCOs (F)

Missing BUSCOs (M)

F2

76,563

892

112,956

16,900

14,042

646.3

9.48%

89.3%

4.9%

5.8%

PH207

81,688

884

2,024,489

29,557

16,860

797.5

8.90%

91.8%

2.7%

5.5%

C103

84,990

886

120,582

19,305

16,146

793

8.21%

90.6%

4.2%

5.2%

  1. Number of scaffold: The number of scaffold sequences assembled, Min Size: the length of the shortest scaffold, Max size: the length of the longest scaffold, Average Size: the average size of scaffolds, N50: N50 of the assembly, Total: the total number of bases included in the assembly, % of Ns: the percentage of Ns present in the assembly; BUSCO statistics included the percentage of complete (C), fragmented (F) and missing (M) BUSCO genes from a total of 1440 BUSCO genes.