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Table 3 Virulence factors predicted with VFDB database

From: Horizontal gene transfer contributes to virulence and antibiotic resistance of Vibrio harveyi 345 based on complete genome sequence analysis

Virulence factor

Annotation

Chromosome

Identity genus

Adherence

 acfA

ACF

II

Vibrio

 IlpA

IlpA

I

Vibrio

 VP1611

MAM7

I

Vibrio

 mshH, mshI, mshI, mshJ, mshK, mshL, mshM, mshN, mshE,

MSHA type IV pilus

I, II

Vibrio

 mshG, mshF, mshA, mshD, mshA, mshA, mshA, mshA,

   

 ompU

OmpU

I

Vibrio

 aatC, aatC

TCP

II

Escherichia

 flp-1, flp-1,tadB, tadC, tadA, flp, rcpC, rcpA, tadZ, tadA,

Flp type IV pili

I, II

Vibrio, Aggregatibacter

 tadB, tadC, tadD, tadE, tadF, tadG, rcpA, tadA

   

 vfr, rpoN, rpoS, pilW, fimT, pilE, pilM, pilN, pilO, pilP,

type IV pili

I, II

Vibrio, Pseudomonas, Salmonella,

 pilQ, pilT, pilU, pilF, pilT, pilR, pilR, pilR, pilW, pilA,

  

Dichelobacter, Yersinia, Haemophilus

 pilR, pilR, pil, R, pilD, pilC, pilB

   

 CJJ81176_1161, CFF8240_1412, CFF8240_1412,

LOS

I, II

Campylobacter, Haemophilus

 C8J_1080, kdsB, lpxK, msbA, kdsA, lpxC, gmhA/lpcA,

   

 htrB, lgtF, lgtF,opsX/rfaC, kdkA,msbB, rfaD, orfM, htrB,

   

 galE, lpxA, lpxB,gmhA/lpcA, htrB, lpxH, yhxB/manB,

   

 galE, msbA, rfaE, neuC1, lpxD

   

 tuf, tuf

EF-Tu

I

Mycoplasma

 htpB

Hsp60

I

Legionella

 lap

Listeria adhesion protein

I

Listeria

 CT396, CT396

MOMP

I

Chlamydia

Motility

 flaD, flaA, flaL, flaK, flaJ, flaI, flaH, flaG, flaF, flaE,

Flagella

I, II

Vibrio, Pseudomonas, Salmonella,

 flaD, flaC, flaB, cheR, cheA, cheB, cheV, cheV, cheW,

  

Legionella, Aeromonas, Pseudomonas

 cheW, cheY, cheZ, filM,flaB, flaD, flaD, flaE, flaG, flaI,

   

 fleQ, fleQ, fleR, flgA, flgA, flgB, flgC, flgD, flgE,

   

 flgF, flgG, flgH, flgI, flgJ, flgK, flgL, flgM, flgM flgN,

   

 flgN, flgO, flgP, flgT, flhA, flhA, flhB, flhB, flhF, flhG,

   

 fliA, fliD, fliE, fliE, fliF, fliF, fliG, fliG, fliH, fliH, fliI,

   

 fliI, fliJ, fliJ, fliK, fliL, fliM, fliN, fliN, fliO, fliP, fliP,

   

 fliQ, fliQ, fliR, fliR, fliS, fliY, flmH, flmH, flmH, flrA,

   

 flrB, flrC, lafA, lafB, lafC, lafD, lafE, lafF, lafK,

   

 lafS, lafU/motB, lafW, motA, motA, motB, motX, motY,

   

 motY, scrA, scrB, scrC, scrG, B565_1123

   

Regulation

 luxS, adeG

AI-2

I, II

Vibrio, Acinetobacter

 cqsA

CAI-1

II

Vibrio

Secretion system

 epsA, epsB, epsC, epsE, epsF, epsG, epsH, epsI, epsJ,

EPS T2SS

I

Vibrio

 epsK, epsL, epsM, epsN, gspD

   

 exsA, exsD, sycN, tyeA, vcrD, vcrG, vcrH, vcrR, vcrV,

T3SS1

I

Vibrio

 vecA, virG, vopB, vopD, vopN, vopQ, vopR, vscB, vscC,

   

 vscD, vscF, vscG, vscH, vscI, vscJ, vscK, vscL, vscN,

   

 vscO, vscQ, vscR, vscS, vscT, vsxU, vscX, vscY, vscC

   

 hopAJ2, hopJ1, mlr6326, ati2, ati1

Other T3SS

I, II

Pseudomonas, Mesorhizobium, Aeromonas

 lpg2936, trwD, virB1, virB10, CbuK_1823, CbuG_0575,

T4SS

I, II

Legionella, Bartonella, Brucella, Coxiella

 CbuG_1738, COXBURSA331_A0369

   

 PFLU6009, Psyr_2628, clpV1, pppA, clpV1, Psyr_2628,

T6SS

I, II

Pseudomonas, Burkholderia, Citrobacter,

 tssH/clpV/bscF, cts2A, lip2, impB, impB, impC, impC

  

Agrobacterium

Toxin

 secA2

Ace

I

Mycobacterium

 tlh

Thermolabile hemolysin

II

Vibrio (Vibrio parahaemolyticus)

 clbQ, clbM, clbL, clbI, clbH, clbF, clbE, clbD, clbC

Colibactin

I

Escherichia

 vctA

Enterobactin

II

Vibrio

 ast

Enterotoxin

I

Aeromonas

Immune evasion

 ABK1_0097, ABK1_0097, BC5270, BC5275, BC5275,

Capsule

I, II

Vibrio, Staphylococcus, Mycoplasma,

 BCE_5384, cap8J, cpsA, cpsB, cpsB, cpsC, cpsD, cpsE,

  

Enterococcus, Acinetobacter, Neisseria,

 cpsF, cpsG, cpsJ, eps9, eps9, kpsF, kpsF, oppF, oppF,

  

Enterococcus, Campylobacter, Burkholderia,

 oppF, rmlB, rmlD, sicC/synD, uppS, wbfB, wbfV/wcvB,

  

Bacillus

 wcbN, wecA, wza, wzb, wzc

   

 fabZ, acpXL, kbtB, waaZ, waaF, gtrB

LPS

I

Brucella, Helicobacter, Pseudomonas, Shigella

 ACICU_00876, ASA_0824, ASA_3329, cbsB, ccmA, ccmB,

Iron uptake

I, II

Vibrio, Acinetobacter, Aeromonas,

 ccmC,ccmE, ccmF, ccmF, chuY, ciuD, fur, hemA, hemB,

  

Burkholderia, Dickeya, Escherichia,

 hemC, hemE, hemG, hemH, hemL, hemN, hemN, hitA, hitB,

  

Haemophilus, Legionella, Mycobacterium,

 hitC, hitC, hmuU, hutA, huvB, huvC, huvD, huvX, huvZ,

  

Pseudomonas, Salmonella, Shigella,

 iutA, mbtI, orbG, orbH, pchH, phuV, PSEEN2499, psuA, pvdH,

  

Yersinia

 pvsA, pvsB, pvsC, pvsD, pvsE, pvuA, pvuB, pvuC, pvuD,

   

 pvuE, sitA, sitB, sitC, sitD, vabC, vctC, vctC, vctD, vctD,

   

 vctG, vctG, vctP, viuC

   

Antiphagocytosis

 algB, algW, algW, algU, mucP, algR

Alginate

I, II

Pseudomonas

 pgi, mrsA/glmM

Exopolysaccharide

I

Haemophilus

 hasD, hasB, hasF

Hyaluronic acid capsule

I, II

Pseudomonas, Serratia, Yersinia

 katA, katA, clpC, clpE, clpP, ctpV, ibpA, msrA/B (pilB),

Stress protein

I, II

Neisseria, Listeria, Mycobacterium,

 regX3, regX3, sodB, sodB, sodC1

  

Legionella, Salmonella

Exoenzyme

 icl

Isocitratase

I

Mycobacterium

 mip, mip

Mip

I, II

Legionella

 Regulation

  

Mycobacterium, Legionella, Salmonella

 mprA, mprA, mprA, relA, rpoS, csrA, sigA

Regulation

I

 

Efflux pump

 mtrD

MtrCDE

I

Neisseria

 panC

Metabolic adaptation

 

Mycobacterium

Others

 csgD, csgD, glnA1, ML1683, ML1683, leuD, MGA_1142,

Others

  

 ipaH, ECS88_3547, ndk, pdhB, ppsE, cysC1, argK, eno, plr/gapA,

 

I, II

Vibrio, Acinetobacter, Escherichia,

 hpt, sugC, sugC, sugC, sugC, sugC, trpD, bfmR, bfmR, bfmR, bfmR,

  

Listeria, Mycobacterium, Mycoplasma,

 vibD, vibE, vibA, VVA1298, VVA1298, VVA1298, vctP

  

Pasteurella, Pseudomonas, Salmonella,

   

Shigella, Streptococcus

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BMC Genomics

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