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Table 2 Breed total number of genome positions that display SNP copy number gains and losses

From: Inter- and intra-breed genome-wide copy number diversity in a large cohort of European equine breeds

Breeds

SNP CNV

% Unique private CNVb

gains

losses

gains

losses

Draught

 Ardenner

4629 (192.88)

4324 (180.17)

3.1

0.4

 Belgian draught horsea

7568 (25.14)

5894 (19.58)

2.8

2.5

 German draught

5777 (262.59)

3894 (177.00)

2.5

0.6

 Exmoor ponies

18,150 (70.90)

4236 (16.55)

6.5

14.0

 Vlaams paard

7318 (332.64)

3715 (168.86)

2.9

1.2

Warmblood

 Belgian Warmblood I

9837 (42.04)

5760 (24.62)

0.1

1.5

 Belgian Warmblood II

10,852 (43.94)

5473 (22.16)

2.4

1.6

 Swedish Warmblood

13,994 (36.54)

5064 (13.22)

0.9

1.1

Friesian

 Friesian horses

56,033 (210.65)

7142 (26.85)

10.5

1.4

  1. SNP CNVs compared to the average signal of the referencea. The average number of SNP CNVs / individual is given within brackets. The percentage of breed specific (unique private) SNP CNV gains and losses in the genome are also shown. bThe sex chromosomes are not included in the total genome size. Every genome position showed a particular SNP CNV in at least 1% of the samples within breed
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BMC Genomics

ISSN: 1471-2164

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