Skip to main content

Table 4 The top 10 up-regulated and down-regulated genes in gene expression analysis

From: PacBio single-molecule long-read sequencing shed new light on the complexity of the Carex breviculmis transcriptome

ID

log2FC

FDR

Regulated

Swissprot annotation

F01.PB17844

13.20

9.34E-73

up

Isocitrate lyase

F01.PB19517

11.96

3.66E-06

up

ATP-dependent zinc metalloprotease FTSH 1, chloroplastic

F01.PB19655

11.76

1.37E-04

up

Malate synthase

F01.PB9089

11.67

3.06E-91

up

Malate synthase

F01.PB55857

11.25

6.22E-07

up

Saccharopine dehydrogenase

F01.PB1057

10.97

6.88E-12

up

BTB/POZ and TAZ domain-containing protein 1

F01.PB57591

10.91

1.51E-3

up

Cyclin-dependent kinase F-4

F01.PB14534

10.59

3.21E-09

up

Hsp70-Hsp90 organizing protein 3

F01.PB15763

10.53

1.24E-10

up

ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

F01.PB666

10.41

6.61E-79

up

Asparagine synthetase

F01.PB21933

−12.07

5.82E-94

down

3′-N-debenzoyl-2-deoxytaxol-N-benzoy ltransferase

F01.PB30266

−11.20

2.64E-41

down

Wall-associated receptor kinase 2

F01.PB58435

−10.55

2.03E-30

down

Receptor-like serine/threonine-protein kinase SD1–8

F01.PB54131

−9.90

2.73E-12

down

Protein translocase subunit SECA1, chloroplastic

F01.PB43948

−9.30

4.30E-26

down

Cinnamoyl-CoA reductase 1

F01.PB4894

−9.23

9.40E-53

down

High-affinity nitrate transporter 2.3

F01.PB1704

−9.21

1.39E-15

down

Bidirectional sugar transporter SWEET4

F01.PB3797

−9.16

7.70E-11

down

uncharacterized protein

F01.PB10550

−9.05

3.29E-23

down

Anthocyanidin 5,3-O-glucosyltransferase

F01.PB52691

−8.87

3.76E-33

down

Wall-associated receptor kinase 2