Locusa | Chrb | Posc | SNP ID | -log10(P) | MAFd | Effecte |
---|
1 | 3 | 2,996,563 | ss715585043 | 4.73 | 0.17 | 0.03 |
2 | 7 | 5,960,839 | ss715598416 | 4.89 | 0.13 | 0.03 |
3 | 11 | 2,124,435 | ss715609637 | 6.08 | 0.46 | −0.03 |
4 | 11 | 12,410,973 | ss715609570 | 4.04 | 0.1 | −0.03 |
5 | 12 | 38,552,678 | ss715612877 | 6.37 | 0.47 | −0.02 |
6 | 14 | 977,674 | ss715620135 | 4.77 | 0.07 | −0.04 |
7 | 15 | 1,906,120 | ss715621180 | 5.56 | 0.33 | −0.02 |
8 | 18 | 1,112,725 | ss715628511 | 6.96 | 0.36 | −0.03 |
9 | 19 | 41,078,499 | ss715635080 | 4.46 | 0.41 | 0.02 |
- a If multiple SNPs were identified in the same linkage disequilibrium (LD) block they were deemed part of the same locus (genomic region). Significant SNPs not part of the same LD block were deemed different loci controlling the trait
- b Chromosome
- c Glyma.Wm82.a2 physical position
- d Minor allele frequency
- e Allelic effects were calculated by taking the difference in mean phenotypic value between the two alleles at a particular SNP, and the direction, negative or positive, of the allelic effect estimates are relative to the alphabetical order of the nucleotides at each particular marker