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Table 2 Summary statistics of the Zinfandel genome assembly and annotation

From: The genomic diversification of grapevine clones

 

Primary

Haplotig

Total length

591,171,721

306,029,957

Number of contigs

1509

2246

N50

1,062,797

442,393

N75

366,308

185,785

L50

154

200

L75

395

463

Median contig length (bp)

161,249

37,307

Longest contig (bp)

7,901,503

2,609,171

Shortest contig (bp)

17,787

1970

Average GC content (%)

34.45%

34.37%

Number of genes

33,523

20,037

 

Total

Average per gene

Number of exons

244,880

4.57

Number of introns

191,320

3.57

 

Average (bp)

Maximum (bp)

mRNA lengths

4166

94,143

Exon lengths

245.79

7992

Intron lengths

191,320

41,647

Intergenic distances

10,309

302,473