The genomic diversification of grapevine clones

BMC Genomics

Table 3 Sniffles analysis of structural variation between Zinfandel parental haplotypes and between Zinfandel and Cabernet Sauvignon

	Zinfandel SV relative to Zinfandel primary assembly					Cabernet Sauvignon SV relative to Zinfandel primary (P) assembly and haplotigs (H)
	Median Size (bp)	Count	Genes	Total SV size (Mb)	% Primary assembly	Median Size (bp)	Count	Genes	Total SV size (Mb)	% genome (P + H)
Deletions	203	12,031	2521	26,953,558	4.56	196	P: 34,259	6761	87,430,736	9.74
Deletions	203	12,031	2521	26,953,558	4.56	196	H: 12,104	2458	27,582,275	3.07
Duplications	1966	553	535	7,604,041	1.29	5518	P: 2264	2787	41,289,418	4.60
Duplications	1966	553	535	7,604,041	1.29	5518	H: 620	499	7,445,635	0.83
Insertions	92	9647	2081	5,594,259	0.95	88	P: 28,825	3708	19,869,958	2.21
Insertions	92	9647	2081	5,594,259	0.95	88	H: 8582	1517	4,000,833	0.45
Inversions	3592	111	391	5,521,214	0.93	6037	P: 517	1305	18,814,293	2.10
Inversions	3592	111	391	5,521,214	0.93	6037	H: 90	135	1,862,657	0.21
Duplicated Insertions	385	3	2	6861	0.0012	339	P: 6	0	42,698	0.0048
Duplicated Insertions	385	3	2	6861	0.0012	339	H: 3	2	1223	0.0001
Inverted Duplications	113	54	11	12,930	0.0022	293	P: 51	9	32,283	0.0036
Inverted Duplications	113	54	11	12,930	0.0022	293	H: 14	3	9534	0.0011

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