Table 1 Summary of RNA-Seq data and mapping statistics
Library | Cleaned Reads | GC Content (%) | Q30 (%) | Mapped Reads | Ratio |
|---|---|---|---|---|---|
Stage 1–1 | 42,774,586 | 42.59% | 93.65% | 34,967,471 | 81.75% |
Stage 1–2 | 41,570,187 | 42.73% | 93.78% | 34,017,316 | 81.83% |
Stage 1–3 | 34,789,353 | 42.68% | 93.20% | 28,593,464 | 82.19% |
Stage 2–1 | 40,858,136 | 42.61% | 93.22% | 33,497,321 | 81.98% |
Stage 2–2 | 35,399,865 | 42.85% | 93.03% | 29,207,997 | 82.51% |
Stage 2–3 | 40,375,395 | 42.66% | 92.97% | 33,093,255 | 81.96% |
Stage 3–1 | 43,859,253 | 43.07% | 92.61% | 35,113,752 | 80.06% |
Stage 3–2 | 35,807,302 | 42.66% | 93.23% | 29,097,263 | 81.26% |
Stage 3–3 | 36,636,478 | 42.68% | 93.16% | 29,739,162 | 81.17% |
Total | 352,070,555 | – | – | 287,327,001 | 81.16% |