Traita | Classb | no_of_SNPc | class_meand | Ratioe | Vgf ± SEf | Vgo ± SEg | Vg_total ± SEh | Vgf/SNPi | Vgf_Ratioj |
---|---|---|---|---|---|---|---|---|---|
HCW | Intergenic region variants | 5,251,680 | 7.168859 | 1.0004 | 222.95 ± 49.14 | 188.13 ± 47.74 | 411.08 ± 48.44 | 4.24531 | 0.512854 |
Downstream gene variants | 253,163 | 7.520336 | 1.0495 | 60.97 ± 39.03 | 349.56 ± 49.21 | 410.53 ± 44.47 | 24.082334 | 2.909263 | |
Upstream gene variants | 285,798 | 7.505758 | 1.0474 | 39.13 ± 38.31 | 370.24 ± 49.29 | 409.37 ± 44.22 | 13.691187 | 1.653962 | |
Synonymous variants | 32,019 | 7.087438 | 0.9890 | 2.05 ± 32.98 | 406.81 ± 46.26 | 408.86 ± 40.3 | 6.411609 | 0.774554 | |
Intron variants | 1,987,366 | 7.055907 | 0.9846 | 143.3 ± 45.55 | 266.95 ± 49.52 | 410.25 ± 47.59 | 7.210423 | 0.871054 | |
Missense variants | 17,654 | 7.920537 | 1.1053 | 0.000836 ± 26.23 | 413.7 ± 42.31 | 413.7 ± 35.35 | 0.004735 | 0.000572 | |
3′ UTR variants | 15,851 | 7.229731 | 1.0089 | 2.98 ± 21.86 | 406 ± 39.82 | 408.98 ± 32.28 | 18.816321 | 2.273103 | |
5′ UTR variants | 3309 | 7.408689 | 1.0339 | 0.000836 ± 16.51 | 421.81 ± 37.35 | 421.81 ± 29.07 | 0.025264 | 0.003052 | |
Other regulatory regions | 6371 | 7.792834 | 1.0875 | 0.000836 ± 23.25 | 411.98 ± 40.68 | 411.98 ± 33.29 | 0.013122 | 0.001585 | |
AFAT | Intergenic region variants | 5,251,680 | 0.022854 | 1.0049 | 2.75 ± 0.69 | 0.67 ± 0.64 | 3.42 ± 0.67 | 0.052299 | 0.155457 |
Downstream gene variants | 253,163 | 0.023221 | 1.0210 | 0.000011 ± 0.55 | 3.91 ± 0.7 | 3.91 ± 0.63 | 0.000004 | 0.000013 | |
Upstream gene variants | 285,798 | 0.02344 | 1.0306 | 0.000011 ± 0.51 | 3.6 ± 0.67 | 3.60 ± 0.60 | 0.000004 | 0.000011 | |
Synonymous variants | 32,019 | 0.022847 | 1.0046 | 0.47 ± 0.47 | 2.98 ± 0.63 | 3.45 ± 0.56 | 1.482551 | 4.406805 | |
Intron variants | 1,987,366 | 0.022241 | 0.9779 | 0.65 ± 0.64 | 2.78 ± 0.7 | 3.43 ± 0.67 | 0.032884 | 0.097746 | |
Missense variants | 17,654 | 0.025805 | 1.1346 | 0.06 ± 0.37 | 3.39 ± 0.57 | 3.44 ± 0.48 | 0.314206 | 0.933962 | |
3′ UTR variants | 15,851 | 0.024082 | 1.0589 | 0.18 ± 0.34 | 3.27 ± 0.54 | 3.45 ± 0.45 | 1.145354 | 3.404504 | |
5′ UTR variants | 3309 | 0.024767 | 1.0890 | 0.000011 ± 0.25 | 3.45 ± 0.5 | 3.45 ± 0.40 | 0.000332 | 0.000988 | |
Other regulatory regions | 6371 | 0.024345 | 1.0704 | 0.000011 ± 0.36 | 3.54 ± 0.56 | 3.55 ± 0.47 | 0.000173 | 0.000513 | |
REA | Intergenic region variants | 5,251,680 | 0.138587 | 0.9972 | 13.81 ± 4.49 | 19.18 ± 4.42 | 32.99 ± 4.46 | 0.262918 | 0.032449 |
Downstream gene variants | 253,163 | 0.145748 | 1.0488 | 6.55 ± 3.73 | 26.32 ± 4.63 | 32.87 ± 4.21 | 2.587783 | 0.319378 | |
Upstream gene variants | 285,798 | 0.144594 | 1.0405 | 6.7 ± 3.76 | 26.01 ± 4.66 | 32.71 ± 4.24 | 2.343388 | 0.289216 | |
Synonymous variants | 32,019 | 0.13927 | 1.0022 | 3.89 ± 3.14 | 28.81 ± 4.34 | 32.7 ± 3.79 | 12.144655 | 1.498865 | |
Intron variants | 1,987,366 | 0.138017 | 0.9931 | 14.76 ± 4.27 | 18.2 ± 4.57 | 32.96 ± 4.42 | 0.742811 | 0.091676 | |
Missense variants | 17,654 | 0.160403 | 1.1542 | 2.12 ± 2.49 | 30.79 ± 3.88 | 32.91 ± 3.27 | 12.029908 | 1.484703 | |
3′ UTR variants | 15,851 | 0.144689 | 1.0411 | 1.73 ± 2.1 | 30.97 ± 3.73 | 32.71 ± 3.03 | 10.944533 | 1.350749 | |
5′ UTR variants | 3309 | 0.145881 | 1.0497 | 0.09 ± 1.48 | 32.7 ± 3.45 | 32.79 ± 2.66 | 2.69595 | 0.332728 | |
Other regulatory regions | 6371 | 0.152593 | 1.0980 | 1.86 ± 2.28 | 31.04 ± 3.77 | 32.9 ± 3.12 | 29.171151 | 3.600236 | |
LMY | Intergenic region variants | 5,251,680 | 0.021969 | 1.0046 | 2.85 ± 0.68 | 0.8 ± 0.64 | 3.66 ± 0.66 | 0.054312 | 0.379217 |
Downstream gene variants | 253,163 | 0.022022 | 1.0070 | 0.00001 ± 0.55 | 4.09 ± 0.69 | 4.09 ± 0.62 | 0.000004 | 0.000028 | |
Upstream gene variants | 285,798 | 0.022437 | 1.0260 | 0.00001 ± 0.51 | 3.72 ± 0.66 | 3.72 ± 0.59 | 0.000003 | 0.000024 | |
Synonymous variants | 32,019 | 0.021771 | 0.9956 | 0.31 ± 0.46 | 3.39 ± 0.62 | 3.70 ± 0.54 | 0.95339 | 6.656776 | |
Intron variants | 1,987,366 | 0.021469 | 0.9818 | 0.73 ± 0.63 | 2.94 ± 0.69 | 3.67 ± 0.66 | 0.036739 | 0.256519 | |
Missense variants | 17,654 | 0.024785 | 1.1334 | 0.04 ± 0.35 | 3.65 ± 0.55 | 3.69 ± 0.46 | 0.244018 | 1.703789 | |
3′ UTR variants | 15,851 | 0.02225 | 1.0175 | 0.00001 ± 0.33 | 3.81 ± 0.54 | 3.81 ± 0.45 | 0.000063 | 0.000440 | |
5′ UTR variants | 3309 | 0.023045 | 1.0538 | 0.00001 ± 0.25 | 3.72 ± 0.5 | 3.72 ± 0.4 | 0.000302 | 0.002110 | |
Other regulatory regions | 6371 | 0.022794 | 1.0423 | 0.00001 ± 0.36 | 3.84 ± 0.56 | 3.84 ± 0.47 | 0.000157 | 0.001096 | |
CMAR | Intergenic region variants | 5,251,680 | 6.845916 | 0.9963 | 667.29 ± 214.86 | 600.03 ± 205.38 | 1267.33 ± 210.16 | 12.706271 | 0.015578 |
Downstream gene variants | 253,163 | 7.285638 | 1.0603 | 192.91 ± 169.25 | 1081.56 ± 206.95 | 1274.47 ± 189.17 | 76.199958 | 0.093423 | |
Upstream gene variants | 285,798 | 7.377171 | 1.0736 | 330.95 ± 170.69 | 927.5 ± 208.27 | 1258.45 ± 190.46 | 115.797731 | 0.141971 | |
Synonymous variants | 32,019 | 7.213334 | 1.0498 | 363.28 ± 151.71 | 897.33 ± 193.21 | 1260.61 ± 173.75 | 1134.569787 | 1.391014 | |
Intron variants | 1,987,366 | 6.79074 | 0.9883 | 385.01 ± 200.95 | 883.24 ± 220.43 | 1268.25 ± 210.94 | 19.372642 | 0.023751 | |
Missense variants | 17,654 | 8.065681 | 1.1738 | 215.62 ± 124.41 | 1044.92 ± 177.69 | 1260.54 ± 153.51 | 1221.362297 | 1.497424 | |
3′ UTR variants | 15,851 | 7.0756 | 1.0297 | 0.004 ± 99.99 | 1284.05 ± 166.53 | 1284.05 ± 137.72 | 0.024427 | 0.000030 | |
5′ UTR variants | 3309 | 7.507205 | 1.0925 | 30.35 ± 72.08 | 1237.79 ± 152.58 | 1268.14 ± 119.70 | 917.210033 | 1.124525 | |
Other regulatory regions | 6371 | 8.107115 | 1.1798 | 244.87 ± 110.14 | 1010.4 ± 168.07 | 1255.27 ± 142.21 | 3843.536337 | 4.712283 |