Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae

Li, Jing; Gao, Xiaoyang; Sang, Shiye; Liu, Changning

doi:10.1186/s12864-019-6319-4

BMC Genomics

Table 3 The miR156 target information of Euphorbiaceae SBP genes

From: Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae

Location	ID	CDS/3’UTR length	Target site	miR site
CDS	JcSBP1	1014	818 GUGCUCUCUCUCUUCUGUCA 837	20 CACGAGAGAGAGAAGACAGU 1
CDS	JcSBP2	1590	1148 GUGCUCUCUCUCUUCUGUCA 1167	20 CACGAGAGAGAGAAGACAGU 1
CDS	JcSBP3	954	683 GUGCUCUCUCUCUUCUGUCA 702	20 CACGAGAGAGAGAAGACAGU 1
CDS	JcSBP5	1443	1154 GUGCUCUCUCUCUUCUGUCA 1173	20 CACGAGAGAGAGAAGACAGU 1
CDS	JcSBP13	1725	1289 GUGCUCUCUCUCUUCUGUCA 130	20 CACGAGAGAGAGAAGACAGU 1
CDS	JcSBP14	1119	230 AAGGGUGUAAAGUGGAUCUGA 250	21 UACCCAUAAUUCAUCUAGACU 1
CDS	JcSBP15	1260	830 GUGCUCUCUCUCUUCUGUCA 849	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	JcSBP7	237	150 CUGCUCUCUCUCUUCUGUCA 169	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	JcSBP8	530	4 UGCUCCCUCUCUUCUGUCAU 23	20 ACGAGAGAGAGAAGACAGUU 1
3’UTR	JcSBP10	214	25 UGCUCCCUCUCUUCUGUCAU 44	20 ACGAGAGAGAGAAGACAGUU 1
CDS	RcSBP3	1149	968 GUGCUCUCUCUCUUCUGUCA 987	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP5	1674	1229 CUGCUCUCUCUCUUCUGUCA 1248	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP11	1155	884 GUGCUCUCUCUCUUCUGUCA 903	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP12	1452	1163 GUGCUCUCUCUCUUCUGUCA 1182	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP13	1134	782 GUGCUCUCUCUCUUCUGUCA 801	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP14	1167	809 GUGCUCUCUCUCUUCUGUCA 828	20 CACGAGAGAGAGAAGACAGU 1
CDS	RcSBP15	1542	1094 GUGCUCUCUCUCUUCUGUCA 1113	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	RcSBP1	214	122 AUGCUCUCUCUCUUCUGUCA 141	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	RcSBP8	235	6 UUGCUCUCUCUCUUCUGUCA 25	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	RcSBP10	325	32 AUGCUCCCUCUCUUCUGUCA 51	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP5	1518	1073 GUGCUCUCUCUCUUCUGUCA 1092	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP7	1446	1160 GUGCUCUCUCUCUUCUGUCA 1179	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP8	1152	881 GUGCUCUCUCUCUUCUGUCA 900	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP9	1125	773 GUGCUCUCUCUCUUCUGUCA 792	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP10	1149	878 GUGCUCUCUCUCUUCUGUCA 897	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP11	1473	1181 GUGCUCUCUCUCUUCUGUCA 1200	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP14	1596	1151 GUGCUCUCUCUCUUCUGUCA 1170	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP15	1500	1073 GUGCUCUCUCUCUUCUGUCA 1092	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP16	1107	917 GUGCUCUCUCUCUUCUGUCA 936	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP17	1674	1229 GUGCUCUCUCUCUUCUGUCA 1248	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP19	1224	818 GUGCUCUCUCUCUUCUGUCA 837	20 CACGAGAGAGAGAAGACAGU 1
CDS	HbSBP24	1197	791 GUGCUCUCUCUCUUCUGUCA 810	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	HbSBP1	263	156 AUGCUCUCUCUCUUCUGUCA 175	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	HbSBP3	266	114 AUGCUCUCUCUCUUCUGUCA 133	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	HbSBP6	389	18 UUGCUCUCUAUCUUCUGUCA 37	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	HbSBP21	2797	18 UUGCUCCCUCUCUUCUGUCA 37	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	HbSBP22	318	19 ACGCUCCCUCUCUUCUGUCA 38	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP1	1518	1073 GUGCUCUCUCUCUUCUGUCA 1092	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP8	1212	818 GUGCUCUCUCUCUUCUGUCA 837	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP10	1050	869 GUGCUCUCUCUCUUCUGUCA 888	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP12	1125	773 GUGCUCUCUCUCUUCUGUCA 792	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP13	1146	875 GUGCUCUCUCUCUUCUGUCA 894	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP14	1467	1178 GUGCUCUCUCUCUUCUGUCA 1197	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP15	1158	881 GUGCUCUCUCUCUUCUGUCA 900	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP16	1437	1151 GUGCUCUCUCUCUUCUGUCA 1170	20 CACGAGAGAGAGAAGACAGU 1
CDS	MeSBP18	1563	1118 GUGCUCUCUCUCUUCUGUCAU 1138	21 CACGAGAGAGAGAAGACAGUU 1
3’UTR	MeSBP4	211	16 AUGCUCCCUCUCUUCUGUCA 35	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	MeSBP17	996	18 UUGCUCCCUCUCUUCUGUCA 37	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	MeSBP20	218	171 GUGCUCUCUCUCGUAUGUCA 190	20 CACGAGAGAGAGAAGACAGU 1
3’UTR	MeSBP21	384	122 AUGCUCUCUAUCUUCUGUCA 141	20 CACGAGAGAGAGAAGACAGU 1

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ISSN: 1471-2164

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