Fig. 4

Statistics of differentially expressed alternatively spliced (DE AS) genes under ABM and TXM treatments. a Pie chart represents all expressed DEGs (270) with Alternative Splicing (AS) events (274). AS genes along with their percentages are divided into four sub-categories; Exon skipping (ES), Alternative 3’splice site (A3SS), Alternative 5’splice site (A5SS), and Intron retention (IR). b Venn diagram represents shared and unique DEGs and their approximate DE AS under ABM treatments. A total number of DE AS (inside) and genes expressed (outside) at each treatment of ABM are specified along with treatment information. c Venn diagram represents shared or unique DEGs and their approximate DE AS under TXM treatments. d Graphical distribution of DE AS in response to ABM or TXM treatments. Total unique and shared DE AS concerning time are provided in squares or alongside arrows, respectively. e An example of A3SS of Os03g60430, AP2 domain-containing protein at relatively 1d treatment under control or ABM. Graphical representation of the gene showing AS activity at 3 site under ABM treated samples. f AS score (lncLevel) is predicted as an example under control, ABM and TXM treatments at three intervals. The y-axis shows the AS score, the highest is 1, while x-axis demonstrates the three treatments. Graph shows high AS activity of Os03g60430 under control and TXM at 1d treatment