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Table 1 The CAZymes families represented in the Entodinium caudatum transcriptome

From: The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features

Family

NO. transcripts

SPa

Notea

AA6

1

1

 

CBM6

1

  

CBM13

9

  

CBM18

1

  

CBM20

20

  

CBM32

2

  

CBM35

1

  

CBM45

4

  

CBM50‡

3

1

 

CBM57

2

2

 

CBM63

1

1

 

CBM67

1

  

CE1

21

  

CE2

1

  

CE3

1

  

CE4

3

 

acetyl xylan esterase, deacetylase (chitin, chitooligosaccharide, peptidoglycan GlcNAc, peptidoglycan MurNAc)

CE7

10

  

CE10†

23

7

 

CE14

1

  

GH2

6

  

GH3

20

7

 

GH5

2

2

 

GH9

1

  

GH13

33

14

 

GH16

4

2

 

GH18

8

6

chitinase, lysozyme

GH24

4

1

lysozyme

GH25

20

12

lysozyme

GH27

1

  

GH28

1

  

GH30

1

1

 

GH31

12

3

 

GH33

1

1

 

GH38

2

1

 

GH43

2

2

 

GH53

1

  

GH55

1

  

GH74

1

1

 

GH76

2

1

 

GH77

1

1

 

GH78

2

  

GH84

6

6

N-acetyl β-glucosaminidase

GH87

4

  

GH89

1

 

α-N-acetylglucosaminidase

GH93

6

  

GH105

1

1

 

GH125

3

  

GT1

1

  

GT2

38

  

GT4

10

  

GT5

2

 

UDP-Glc:glycogen glucosyltransferase, ADP-Glc:starch glucosyltransferase, NDP-Glc:starch glucosyltransferase, UDP-Glc:α-1,3-glucan synthase, UDP-Glc:α-1,4-glucan synthase

GT8

14

  

GT10

1

  

GT17

5

  

GT20

3

  

GT23

2

  

GT28

1

  

GT33

1

  

GT35

1

 

glycogen or starch phosphorylase

GT41

1

  

GT50

1

  

GT69

2

  

GT75

1

  

GT83

1

  

GT92

7

  

PL8

1

  

PL9

1

 

lyase (thiopeptidoglycan, pectate, exopolygalacturonate)

  1. a enzymes activities or substrates are indicated for the families that contain lysozyme enzymes and CAZymes that are involved in degradation of chitin and peptidoglycan or synthesis of glycogen
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BMC Genomics

ISSN: 1471-2164

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