Table 1 The final composition of B. miyamotoi Izh-4 genome and coverage by long and short reads
GenBank accession numbers | Molecule name | Length, bp | PacBio read coverage before and after correction in brackets | MinION read coverage before and after correction in brackets | Illumina reads coverage | |
|---|---|---|---|---|---|---|
1 | CP024390.1 | chromosome | 906,129 | 695x (16x) | 668x (200x) | 440x |
2 | CP024391.1 | pIzh4-lp72 | 73,492 | 1378x (24x) | 1118x (300x) | 402x |
3 | CP024392.1 | pIzh4-lp70 | 70,072 | 677x (17x) | 573x (122x) | 359x |
4 | CP024401.2 | pIzh4-lp64 | 64,141 | 321x (5x) | 365x (67x) | 262x |
5 | CP024393.1 | pIzh4-lp41 | 41,127 | 509x (11x) | 447x (54x) | 523x |
6 | CP024395.1 | pIzh4-cp30–1 | 30,091 | 1712x (26x) | 591x (162x) | 192x |
7 | CP040828.1 | pIzh4-cp30–2 | 29,490 | 657x (13x) | 265x (49x) | 177x |
8 | CP024396.1 | pIzh4-lp29 | 28,667 | 1211x (23x) | 544x (72x) | 614x |
9 | CP024397.1 | pIzh4-lp23 | 27,717 | 528x (16x) | 329x (37x) | 504x |
10 | CP024398.1 | pIzh4-lp27 | 26,599 | 862x (17x) | 334x (20x) | 251x |
11 | CP024399.2 | pIzh4-lp24 | 24,033 | 1263x (18x) | 470x (78x) | 466x |
12 | CP024400.2 | pIzh4-lp18–2 | 18,334 | 1554x (17x) | 323x (63x) | 722x |
13 | CP024405.2 | pIzh4-lp18–1 | 18,024 | 771x (14x) | 123x (49x) | 527x |
14 | CP024404.1 | pIzh4-lp13 | 13,410 | 480x (9x) | 118x (43x) | 327x |
15 | CP024407.1 | pIzh4-lp6 | 5851 | 578x (3x) | 138x (92x) | 625x |
Total reads: | 312,224 (2625) | 129,992 (31,584) | 2,642,950 | |||
Mapped reads: | 95% (100%) | 100% (100%) | 93% |