Table 1 The 24 root pathways common to the three challenge categories. The names of the root pathways are given in the first column. The second column shows the number of leaf pathways in a particular root and this number is shown as a percentage of all the leaf pathways in the root pathway in the database
Root pathways | Common Leaf pathways | Ratio of common leaf pathways in the root pathway |
|---|---|---|
Metabolism | 54 | 22% |
Disease | 53 | 24% |
Signalling Pathways | 47 | 32% |
Immune System | 29 | 33% |
Cell Cycle | 20 | 30% |
Gene Expression | 13 | 18% |
Hemostasis | 11 | 44% |
Programmed Cell Death | 7 | 26% |
Transcription | 6 | 29% |
Metabolism of proteins | 4 | 8% |
Chromatin organization | 3 | 60% |
Circadian Clock | 3 | 100% |
Developmental Biology | 2 | 5% |
DNA Replication | 2 | 18% |
Extracellular matrix organization | 2 | 18% |
Membrane Trafficking | 2 | 18% |
Transmembrane transport of small molecules | 2 | 6% |
Binding and Uptake of Ligands by Scavenger Receptors | 1 | 20% |
Cell-Cell communication | 1 | 13% |
Cellular responses to stress | 1 | 9% |
DNA Repair | 1 | 4% |
Muscle contraction | 1 | 50% |
Organelle biogenesis and maintenance | 1 | 9% |
Post-Elongation Processing of the Transcript | 1 | 25% |