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Table 1 Diurnal expression characteristics of syntenic circadian clock and circadian clock-associated genes

From: Interspecific analysis of diurnal gene regulation in panicoid grasses identifies known and novel regulatory motifs

  

CT Phasea, hours

  

Amplitudea, FPKM

 

Name

Atb

Sb

Zm1

Zm2

Si

Sb

Zm1

Zm2

Si

LYL1/LHYL2

23

0

1.5

0

0

218.1

33.8

31.9

385.7

RE2L

20

0

21

-c

22.5

52.6

18.8

–

65.0

RE6L1

ndd

21

21

–

21

8.4

1.3

–

4.8

RE6L2/RE6L3

nd

nre

nr

nr

18

nr

nr

nr

3.7

RE6L4/RE6L5

nd

22.5

21

22.5

21

24.4

3.0

18.1

44.4

RE7L1/RE7L2

nd

19.5

18

14.7

19.5

1.9

2.3

0.8

1.8

RE7L3/RE7L4

nd

15

16.5

18

13.5

10.8

23.3

18.9

37.5

T1L1/T1L2

13

10.5

12

9

9

9.5

5.9

1.1

5.6

P59L1

8

–

7.5

–

–

–

2.2

–

–

P59L2

8

8.3

–

9

7.5

14.3

–

3.4

10.2

P73L

7

6

–

4.5

4.5

74.3

–

45.3

66.9

P95L1/P95L2

5

6

6

7.5

6

21.0

16.0

2.5

45.2

GI2/1

8

9

7.5

9

7.5

120.4

13.0

103.1

135.2

EF3L1

14

21

20.3

–

19.5

10.8

6.8

–

11.0

EF3L2

16

16.5

15

–

13.5

27.9

12.1

–

16.2

EF4R1/2

11

9

7.5

nr

7.5

14.5

9.4

nr

35.9

EF4R3

11

nr

nr

–

nr

nr

nr

–

nr

EF4R4

11

10.6

13.5

–

9.0

0.6

1.5

–

1.5

LXL

11

12

–

10.5

10.5

4.7

–

5.6

12.9

ZLL1/ZLL2

nr

16.5

nr

10.5

16.5

7.8

nr

1.7

4.8

ZLL3/ZLL4

nr

0

0

nr

15

10.3

4.5

nr

3.1

FFL1/FFL2

11

7.5

8.3

9

7.5

3.8

2.3

7.2

8.3

  1. aValues are from JTK_Cycle analysis in Tables S2-S4 for sorghum (Sb), maize subgenome 1 (Zm1), maize subgenome 2 (Zm2), and foxtail millet (Si) genes
  2. bPhase values for orthologous Arabidopsis (At) genes plants under light-dark photocycles and hot-cold temperature cycles (LDHC) from reference [37]
  3. cNo syntenic gene
  4. dNot determined
  5. eExpression not rhythmic
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BMC Genomics

ISSN: 1471-2164

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