Population genomics of Vibrionaceae isolated from an endangered oasis reveals local adaptation after an environmental perturbation

Table 1 Pan-genome metrics of each Vibrionaceae clades isolated from Poza Rojas, CCB

Group Clade	Number of CCB genomes included in each clade	Pan-genome metrics				Heaps law parameters
Group Clade	Number of CCB genomes included in each clade	Core	Flexible	Unique	Total number of genes	Intercept value	Alpha
Clade I	3	3617	346	603	4566	692.8508	1.1293
Clade II	22	1746	5770	1745	9261	244.2096	0.7913
Clade III	5	2672	718	324	3714	658.0634	1.6625
Clade IV	5	2055	1445	180	3680	2726.7580	2.0000
Clade V	4	2853	1660	1332	5845	1196.2571	1.3109
Clade VI	3	2448	3476	1028	4992	3295.5770	2.0000
Vibrionaceae all Clades	47	1254	14,072	4795	20,121	2263.7472	0.6621

The first column shows the Clade ID, next is the number of genomes used for the analysis regarding each clade, followed by the general metrics of pan-genome, and last columns show the Heaps law values obtained. If alpha > 1.0 the pan-genome is considered closed if alpha < 1.0 it is considered open

ISSN: 1471-2164