Table 2 Candidate genes for resistance to CBB. Bold cases indicate non differentially-expressed genes (i.e. genes with −1.5 < log2FC < 1.5 and/or adjusted p-value ≥0.05)
Gene ID | Annotation | log2FC BAT93 | log2FC JaloEEP558 | |Δlog2FC| > 5 | Inverse pattern of expression | Colocation with QRLs |
|---|---|---|---|---|---|---|
Phvul.001G039700 | 17.6 kDa class II HSP | -1,67 | 8,75 | Yes | Yes | – |
Phvul.001G061000 | Sulfite exporter TauE/SafE family | -1,86 | 3,23 | Yes | Yes | – |
Phvul.001G229800 | plasmodesmata-located protein 7 | -5,58 | 5,80 | Yes | Yes | – |
Phvul.002G212000 | HSP20-like chaperones superfamily | -2,96 | 7,52 | Yes | – | Yes |
Phvul.002G231500 | HSP20-like chaperones superfamily | -3,20 | 9,04 | Yes | – | Yes |
Phvul.002G243500 | GDSL-like Lipase/Acylhydrolase superfamily | -8,35 | -2,79 | Yes | – | Yes |
Phvul.002G249800 | RmlC-like cupins superfamily | -3,81 | 1,43 | Yes | – | Yes |
Phvul.002G318500 | Pectin methylesterase inhibitor | -1,86 | 3,43 | Yes | Yes | – |
Phvul.003G265800 | PLAC8 family protein | 3,25 | -4,07 | Yes | Yes | – |
Phvul.005G014200 | NLR | -1,02 | -8,31 | Yes | – | Yes |
Phvul.005G034000 | cytokinin oxidase/dehydrogenase 6 | -9,67 | -0,86 | Yes | – | Yes |
Phvul.005G044600 | NAC (No Apical Meristem) domain transcriptional regulator superfamily | 0,46 | 5,50 | Yes | – | Yes |
Phvul.005G049700 | LOB 4 | -1,25 | 4,23 | Yes | – | Yes |
Phvul.005G058600 | MLP-like protein 43 | 4,19 | -2,73 | Yes | – | Yes |
Phvul.005G085800 | light-harvesting chlorophyll B-binding protein 3 | -5,41 | -0,30 | Yes | – | Yes |
Phvul.005G097600 | plasmodesmata callose-binding protein 5 | 1,33 | -3,99 | Yes | – | Yes |
Phvul.005G097800 | bZIP transcription factor | -1,98 | 3,92 | Yes | – | Yes |
Phvul.006G197100 | Pathogenesis-related 1 protein | 4,85 | -1,52 | Yes | Yes | – |
Phvul.007G013000 | Eukaryotic aspartyl protease family | -5,87 | 1,45 | Yes | – | Yes |
Phvul.007G018600 | FAD/NAD(P)-binding oxidoreductase family | -1,88 | 2,98 | – | Yes | Yes |
Phvul.007G024800 | Major facilitator superfamily | 1,05 | -4,98 | Yes | – | Yes |
Phvul.007G030300 | receptor serine/threonine kinase, putative | -1,32 | -6,34 | Yes | – | Yes |
Phvul.007G038400 | CYCLIN D3;1 | -7,76 | -2,01 | Yes | – | Yes |
Phvul.007G049700 | cysteine-rich RLK 29 | -1,88 | 1,68 | – | Yes | Yes |
Phvul.007G051300 | cysteine-rich RLK 25 | 0,49 | -5,54 | Yes | – | Yes |
Phvul.008G081300 | Protein kinase superfamily | -3,96 | 3,96 | Yes | Yes | – |
Phvul.008G137100 | Lipid-transfer protein | -3,68 | 5,63 | Yes | Yes | – |
Phvul.009G030900 | Unknown protein | -5,53 | 0,56 | Yes | – | Yes |
Phvul.009G057100 | ovate family protein 7 | 4,64 | -4,99 | Yes | Yes | Yes |
Phvul.009G080200 | 17.6 kDa class II HSP | -3,10 | 4,47 | Yes | – | Yes |
Phvul.009G084400 | Integrase-type DNA-binding superfamily | -0,53 | 7,55 | Yes | – | Yes |
Phvul.009G094000 | plant natriuretic peptide A | -0,53 | 8,66 | Yes | – | Yes |
Phvul.009G097500 | mitotic-like cyclin 3B | -5,85 | -0,65 | Yes | – | Yes |
Phvul.009G106200 | proline extensin-like receptor kinase 1 | -2,56 | 2,82 | Yes | – | Yes |
Phvul.009G119200 | SBP family | 1,54 | -4,90 | Yes | Yes | – |