Table 2 Peak memory usage for in-memory processing tools
From: Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework
Tool | Exome | Genome |
|---|---|---|
elPrep (sfm) | 6.8GB | 68GB |
elPrep (filter) | 26GB | X |
ArrowSAM | 7.2GB | 69GB |
From: Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework
Tool | Exome | Genome |
|---|---|---|
elPrep (sfm) | 6.8GB | 68GB |
elPrep (filter) | 26GB | X |
ArrowSAM | 7.2GB | 69GB |