A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

BMC Genomics

Table 3 Replicability of ATAC-seq peaks. Overlap of peak sets derived from biological replicates

Species	Tissue	Rep. A Peaks	Rep. B Peaks	Rep. A Peaks overlapping Rep. B Peaks	% Rep. A Peaks	Rep B. Peaks overlapping Rep A. peaks	% Rep B. Peaks
Cattle	Adipose	59,612	133,768	38,647	64.8	38,471	28.8
	Brain Cortex	109,395	160,546	75,462	69.0	75,206	46.8
	Hypothalamus	59,966	37,036	19,970	33.3	19,999	54.0
	Liver	102,704	114,583	58,444	56.9	58,563	51.1
	Lung	221,576	248,844	167,311	75.5	166,777	67.0
	Muscle	107,208	113,502	76,780	71.6	76,801	67.7
	Spleen	110,852	200,323	79,355	71.6	79,007	39.4
Pig	Adipose	9192	7645	4778	52.0	4778	62.5
	Cerebellum	220,327	214,455	132,123	60.0	132,292	61.7
	Brain Cortex	142,658	156,069	103,581	72.6	103,382	66.2
	Hypothalamus	103,402	144,418	63,382	61.3	63,368	43.9
	Liver	112,202	136,085	78,395	69.9	78,274	57.5
	Lung	167,298	191,926	114,470	68.4	113,864	59.3
	Muscle	137,000	105,823	92,039	67.2	92,705	87.6
	Spleen	100,982	100,867	64,192	63.6	64,208	63.7

ISSN: 1471-2164