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Table 3 Summary statistics for read coverage distribution per variant across approaches

From: Development and comparison of RNA-sequencing pipelines for more accurate SNP identification: practical example of functional SNP detection associated with feed efficiency in Nellore beef cattle

Approach

Minimum

Median

Maximum

Mean ± SD

1st Quartile

3rd Quartile

Approach i)

 Liver

2

41

199,156

279.19 ± 2442.20

12

124

 Muscle

2

55

199,974

455.65 ± 3619.21

13

218

Approach ii)

 Liver

2

41

199,156

281.89 ± 2457.76

12

125

 Muscle

2

56

199,974

461.60 ± 3650.29

13

221

Approach iii)

2

62

209,060

572.59 ± 3993.11

13

280

  1. Approach i) non-merged samples; Approach ii) merged samples by group for low-RFI and merged samples for high-RFI for each tissue, Approach iii) merged samples by group and tissue for low- and high-RFI for both tissues
  2. SD Standard Deviation
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BMC Genomics

ISSN: 1471-2164

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