Table 2 Summary of sRNA sequencing analysis of Azospirillum brasilense Sp245
S.No. | Steps | VN | VC |
|---|---|---|---|
1 | Total number of raw sRNA sequence reads | R1: 27200643 | R1: 16557793 |
R2: 27200643 | R2: 16557793 | ||
2 | Total number of Reads after Adapter removal and Quality filtering at q20 | R1: 7731698 | R1: 5513335 |
R2: 7731698 | R2: 5513335 | ||
3 | Mapping percentage with reference genome (Azospirillum brasilense Sp245) | 97.07% | 97.47% |
4 | Number of assembled reads (sRNA) | 15,614 | 15,424 |
5 | Assembled sRNAs sorted based on size 50-500 bp | 3838 | 3788 |
6 | Total number of differentially expressed sRNAs in both samples VN & VC (Additional File 2) | 3860 | |
7 | No. of differentially expressed sRNAs, between 50 and 500 bp length, (Additional File 2) | 458 | |
8 | No. of significantly differentially expressed sRNAs pvalue: < 0.05 (with FDR) & sRNAs length between 50 and 500 bp (Additional File 2) | 59 | |
9 | No. of Downregulated sRNA genes (Table 3) | 18 | |
10 | No. of Upregulated sRNA genes (Table 3) | 41 | |