Fig. 3
From: Improving CLIP-seq data analysis by incorporating transcript information
IGV snapshot of two genomic regions with mapped IGF2BP3 K562 and PUM2 K562 eCLIP data. 1: read profile (coverage), 2: read alignments, 3: crosslink positions profile, 4: input control profile, 5: gene annotations (thick blue regions are exons, thin blue regions introns), IGF2BP3 / PUM2 motif: RBP motifs mapped with CLIPcontext, CLIPper IDR: CLIPper IDR peaks, PEAKachu: PEAKachu peaks, PureCLIP: PureCLIP peaks (nearby crosslink positions merged). For clarity only gene strand reads from replicate 1 are displayed. aRACK1 gene exons 7 and 8 region (length 911 bp, maximum read coverage 150) with split IGF2BP3 motif hit. bRTRAF gene exons 4 and 5 region (length 1.599 bp, maximum read coverage 58) with split PUM2 motif hit