Table 3 Summary of SNPs significantly associated with salt tolerance related traits
Traits | Chr. | Site | Allele | MAF | -Log10(P) | PVE | Environment |
|---|---|---|---|---|---|---|---|
RPH | A10 | 84,786,908 | C/T | 0.15(T) | 4.27 | 5.67 | 2016 |
A10 | 84,851,927 | G/A | 0.20(A) | 4.10 | 4.31 | 2016 | |
A13 | 1,869,056 | C/G | 0.33(C) | 4.22, 4.36 | 4.41,4.93 | 2016, 2017 | |
A07 | 90,682,411 | C/T | 0.12(T) | 4.35 | 4.58 | 2017 | |
A09 | 62,356,818 | A/G | 0.19(A) | 4.13 | 7.00 | 2017 | |
A12 | 74,098,493 | G/A | 0.49(A) | 4.58 | 5.51 | 2017 | |
D02 | 38,449,756 | T/A | 0.47(T) | 4.01 | 1.50 | 2017 | |
D03 | 18,961,034 | T/G | 0.11(G) | 4.18 | 2.54 | 2017 | |
D08 | 49,014,753 | C/T | 0.13(T) | 4.34, 4.16 | 4.35,3.83 | 2016, 2017 | |
D08 | 49,080,865 | G/A | 0.13(A) | 4.34, 4.16 | 4.35,3.83 | 2016, 2017 | |
RSFW | A08 | 5,515,194 | C/T | 0.10(T) | 4.79 | 4.23 | 2016 |
A10 | 84,786,908 | C/T | 0.15(T) | 4.19 | 2.95 | 2016 | |
D06 | 19,966,743 | C/G | 0.5(G) | 4.09 | 3.56 | 2016 | |
A07 | 90,532,061 | C/G | 0.13(G) | 4.73 | 5.23 | 2017 | |
A07 | 90,682,411 | C/T | 0.12(T) | 4.13, 4.73 | 2.40, 5.25 | 2016, 2017 | |
A08 | 41,804,418 | T/A | 0.09(T) | 4.23 | 2.74 | 2017 | |
A08 | 53,916,411 | G/A | 0.088(G) | 4.15 | 2.35 | 2017 | |
| Â | A11 | 117,938,337 | G/A | 0.32(A) | 4.09 | 3.08 | 2017 |
RSDW | A05 | 94,406,377 | C/T | 0.33(T) | 4.17 | 2.92 | 2016 |
A08 | 5,589,045 | G/A | 0.19(A) | 4.67 | 4.85 | 2016 | |
A08 | 6,254,890 | T/G | 0.22(G) | 4.36,4.66 | 3.52,4.33 | 2016,2017 | |
A13 | 42,992,196 | A/T | 0.48(T) | 4.27,4.28 | 2.79,3.03 | 2016,2017 | |
D08 | 47,703,450 | C/T | 0.096(T) | 4.35 | 1.93 | 2016 | |
D08 | 48,527,413 | C/A | 0.12(A) | 4.23 | 1.29 | 2016 | |
D08 | 48,911,757 | C/G | 0.13(G) | 4.44 | 2.62 | 2016 | |
| Â | D08 | 49,014,753 | C/T | 0.13(T) | 5.20 | 3.88 | 2016 |
| Â | D08 | 49,080,865 | G/A | 0.13(A) | 5.20 | 3.88 | 2016 |