Quality Metrics | 3’Pool-seq | mRNA TruSeq |
---|---|---|
# of samples | 6 | 6 |
Reads per sample (Millions) | 6.4 ± 3.6 | 33 ± 10.4 |
Number Uniquely Mapped Reads (Millions) | 4.7 ± 2.7 | 28.7 ± 8.7 |
% mapped reads | 87.2 ± 2 | 94.4 ± 1.9 |
% Uniquely mapped reads | 72 ± 4 | 87 ± 1 |
% coding reads | 24 ± 0.8 | 36 ± 2 |
% UTR reads | 42 ± 0.7 | 34 ± 0.2 |
% rRNA reads (× 10^-5) | 2 ± 0.4 | 19.8 ± 8 |
% non-mRNA reads | 31 ± 2 | 28 ± 3 |
# of genes detected (TPM >1) | 13,571 ± 179 | 14,135 ± 211 |
ERCC correlation with theoretical concentrations (r2) | 0.93 ± 0.01 | 0.87 ± 0.03 |
ERCC pairwise correlation between samples (r2) | 0.97 ± 0.01 | 0.95 ± 0.01 |