Table 3 LncRNAs that were predicted as miRNA targets and eTMs in melon
LncRNA ID | miRNA ID | miRNA sequence | LncRNA sequence |
|---|---|---|---|
Targets | |||
 LNC_012115 | Cm-miR156 | ACTGTCTTCTATCTCTCGTG | TGACAGAAGAGAGTGAGCAC |
 LNC_011287 | Cm-miR156 | TTCTGTCTTCTATCTCTGTT | TTGACAGAAGATAGAGAGCAC |
 LNC_011878 | Cm-miR156 | CACTGTCTTCTCTCACTCGTG | TTGACAGAAGATAGAGAGCAC |
 LNC_012070 | Cm-miR156 | AACCGTCTTCTGTTTCTCGTT | TTGACAGAAGATAGAGAGCAC |
 LNC_013946 | Cm-miR156 | AACTGTCTTCTCTCACTCGTG | TTGACAGAAGATAGAGAGCAC |
 LNC_021671 | Cm-miR156 | ACTTTCTTCTATTTTTCGTT | TGACAGAAGATAGAGAGCAC |
 LNC_013934 | Cm-miR159 | AAACTTATCTTCCCTCGAGT | TTTGGATTGAAGGGAGCTCTA |
 LNC_027695 | Cm-miR159 | TAACCTGACTTCCCTCGAGGA | TTTGGATTGAAGGGAGCTCTA |
 LNC_006537 | Cm-miR162 | AGCTATTTCGATACGTAGTC | TCGATAAACCTCTGCATCCAG |
 LNC_016936 | Cm-miR164 | ACCTCTACGTCTCGTGTACTC | TGGAGAGGCAGGGCACATGCT |
 LNC_017766 | Cm-miR164 | ACTTCTCCGTCCCGTATTCGA | TGGAGAGGCAGGGCACATGCT |
 LNC_020709 | Cm-miR164 | ACTTCTCCGTTACGTGTAGA | TGGAGAGGCAGGGCACATGCT |
 LNC_000218 | Cm-miR166 | AGCCTGGTCCGAAGTAAGGGG | TCGGACCAGGCTTCATTCCCC |
 LNC_008758 | Cm-miR166 | AGCCTGGTCCGAAGTAAGGAG | TCGGACCAGGCTTCATTCCCC |
 LNC_018819 | Cm-miR167 | AGTTCGACGGTCGTACTAGAT | TGAAGCTGCCAGCATGATCTA |
 LNC_021730 | Cm-miR167 | GCTTCGACTGTCGTACTGTT | TGAAGCTGCCAGCATGATCTA |
 LNC_022241 | Cm-miR168 | TCGCTTGGTGCAGGTCGGGA | AGCGAACCACGTCCAGCCCT |
 LNC_004566 | Cm-miR169 | TTCGTTTCCTACTTAACCAAC | AAGCCAAGGATGAATTGCCGG |
 LNC_010303 | Cm-miR169 | ATCGGTTCCTGCTGAACGGCG | AAGCCAAGGATGAATTGCCGG |
 LNC_022185 | Cm-miR1863 | AGCTCTGATACCATGTTAGATTTG | ACGAGACTATGGTATAATTTGAC |
 LNC_027695 | Cm-miR319 | TTGGACTGAAGGGAGCTCCC | AACCTGACTTCCCTCGAGGA |
 LNC_008308 | Cm-miR390 | AAGCTCAGGAGGGATAGCGCC | GTCGAGTTCTCCCTATCTGT |
 LNC_005952 | Cm-miR393 | TCCAAAGGGATCGCATTGATC | AGGGTTACCTAGCGTAACTAC |
 LNC_014927 | Cm-miR394 | TTGGCATTCTGTCCACCTCC | AACCGTAAGACAGGTGGAGG |
 LNC_024182 | Cm-miR395 | CTGAAGTGTTTGGGGGAACTC | TACTTCACAAACTCCCTTAT |
 LNC_006804 | Cm-miR398 | TGTGTTCTCAGGTCGCCCCTG | ACACAAGAGTCCAGTGGGGAA |
 LNC_014183 | Cm-miR398 | TGTGTTCTCAGGTCGCCCCTG | CCATAAGAGTCCGGCGG-AAC |
 LNC_020691 | Cm-miR399 | TGCCAAAGGAGAATTGCAC | TCTGTTTCCTCTTAACGG |
 LNC_022982 | Cm-miR399 | TGCCAAAGGAGAATTGCAC | ACAGTTTCCTCTTTACGTA |
 LNC_005545 | Cm-miR477 | CTCTCCCTCAAAGGCTTCTG | GGGTGGGAGTTTCCGAAAG |
 LNC_007655 | Cm-miR530 | TGCATTTGCACCTGCACCTT | ATGTAAACGTGGATGTAGACA |
 LNC_004049 | Cm-miR854 | GATGAGGATAGTGAGGAGGAG | CTACTCCTATCACTCCTCCTC |
 LNC_012258 | Cm-miR854 | GATGAGGATAGTGAGGAGGAG | CTACCCCTATCACTACTCCTC |
 LNC_020802 | Cm-miR854 | GATGAGGATAGTGAGGAGGAG | TCAGTCCTATCACTCCTTCTC |
 LNC_026553 | Cm-miR854 | GATGAGGATAGTGAGGAGGAG | CTTCTCCTATCACTCCTCCTC |
 LNC_011348 | Cm-miR858 | TCTCGTTGTCTGTTCGACCTT | AGGGCAACAGGCAAGCTTGTT |
 LNC_007955 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | ACAGTTTAGATTTGCTAGCAAATA |
 LNC_008970 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | TAAGTTTAGATTTGCTAGCACATG |
 LNC_009809 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | TTGGTTTAGATTTGCTGACACATG |
 LNC_010638 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | CGGTTTAGATTTGCTAGAACATT |
 LNC_016701 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | TTAGTTTAGATTTGCTAGCACATG |
 LNC_023506 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | TCAGTTTAGATTTGTTAGCACATG |
 LNC_024789 | Cm-miR7129 | AGTCAAATCTAAACGATCGTGTAT | GAAGTTTAGATTTGCTAGCACGA |
 LNC_021385 | Cm-miR7130 | GTTTGGAATGTGCGAGATGTGTGC | TCAACTTTACACGCTCTACACACG |
eTMs | |||
 LNC_015061 | Cm-miR156 | TGACAGAAGA---GAGTGAGCAC | ACTGTCTTCTAAGTTCACACGTG |
 LNC_001794 | Cm-miR159 | ATTGGATTGA---AGGGAGCTCCT | TAACCTAACTATGTTCCTCGAGTA |
 LNC_005497 | Cm-miR167a | TGAAGCTGCC---AGCATGATCTT | ACTTCGACGGCTTTTGTACAAGGA |
 LNC_004707 | Cm-miR167b | TGAAGCTGC---CAGCATGATCTG | ACTTCGACGACTGTCGTGATAGGC |
 LNC_001168 | Cm-miR169 | GAGCCAAGAA---TGACTTGCCGG | CTCGGTTCTTGAAACTGAACGGCT |
 LNC_027362 | Cm-miR172 | AGAATCTTGA---TGATGCTGCAT | TATTAGAACTACTACTATGACGCA |
 LNC_017301 | Cm-miR394 | TTGGCATTC---TGTCCACCTCC | AACCGTAAGTCCATAGGTGAAGT |
 LNC_013466 | Cm-miR395 | TTGAAGTGTT---TGGGGGAACTC | AACTTCACAAAACACTCACTTGAG |
 LNC_005015 | Cm-miR398 | TGTGTTCTC---AGGTCACCCCTT | ACACAAGAGAACTCCAGTCGAGAA |
 LNC_019732 | Cm-miR477 | CTCTCCCTC---AAAGGCTTCTG | GAGAGGGAGAGGTTTTCTAAAAC |
 LNC_023016 | Cm-miR854 | GATGAGGATA---GTGAGGAGGAG | CTACTCCTATTGCCACTCTTACTA |
 LNC_027169 | Cm-miR854 | GATGAGGATA---GTGAGGAGGAG | CTACTCCTACGCTCACTACTACTT |
 LNC_027417 | Cm-miR854 | GATGAGGATA---GTGAGGAGGAG | CTACTCCTATTAAAAGTCCTGCTC |