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Table 3 Average runtimes (in seconds) on 1000-species datasets with low ILS, using NJst starting trees and RAxML constraint trees

From: Unblended disjoint tree merging using GTM improves species tree estimation

 

GTM

NJMerge

TreeMerge

10 Exons (n=2)

0.43

946

477

10 Introns (n=8)

0.42

732

446

25 Exons (n=9)

0.41

728

583

25 Introns (n=10)

0.43

685

543

1000 Exons (n=20)

0.43

2055

N/A

1000 Introns (n=20)

0.43

2010

N/A

  1. The value for n is the number of replicates being compared, where all three methods finished; NJMerge failed or timed out on the missing 10 and 25-gene low ILS replicates. TreeMerge timings were unavailable for 1000 genes
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BMC Genomics

ISSN: 1471-2164

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