Table 1 Examples of rnpB predictions by P Finder compared with BCheck
From: P finder: genomic and metagenomic annotation of RNase P RNA gene (rnpB)
Structural Type | Accesion | P Finder | BCheck | Strand | ||
|---|---|---|---|---|---|---|
Start | End | Start | End | |||
A-Type (Bacteria and Archaea) | ||||||
trachomatis | NC_022118.1 | 457146 | 457551 | 457145 | 457548 | plus |
Escherichia coli LF82 | NC_011993.1 | 3317722 | 3318098 | 3317726 | 3318098 | minus |
Klebsiella pneumoniae MGH 78578 | NC_009648.1 | 3896359 | 3896741 | 3896363 | 3896741 | minus |
Halobacteroides halobius DSM 5150 | NC_019978.1 | 1887825 | 1888178 | 1887824 | 1888177 | plus |
Cyanobacterium aponinum PCC 10605 | NC_019776.1 | 1149026 | 1149401 | 1149025 | 1149400 | plus |
Candidatus Korarchaeum cryptofilum | NC_010482.1 | 603218 | 603511 | 603217 | 603510 | plus |
Methanobacterium sp. SWAN-1 | NC_015574.1 | 2345793 | 2346086 | 2345792 | 2346085 | plus |
Picrophilus torridus DSM 9790 | NC_005877.1 | 818122 | 818422 | 818121 | 818421 | plus |
Methanobacterium sp. AL-21 | NC_015216.1 | 221739 | 222031 | 221738 | 222030 | plus |
B-Type | ||||||
Mycoplasma conjunctivae HRC/581 | NC_012806.1 | 816571 | 816858 | 816570 | 816857 | plus |
CandidatusPhytoplasmaasteris | NC_007716.1 | 652124 | 652495 | 652117 | 652499 | minus |
Bacillus subtilis QB928 | NC_018520.1 | 2310826 | 2311206 | 2310818 | 2311211 | minus |
Streptococcus pyogenes MGAS6180 | NC_007296.1 | 1389794 | 1390162 | 1389786 | 1390167 | minus |
Staphylococcus aureus T0131 | NC_017347.1 | 1533810 | 1534189 | 1533802 | 1534194 | minus |
C-Type | ||||||
Sphaerobacter thermophilus DSM 20745 | NC_013523.1 | 1710922 | 1711286 | - | - | plus |
Thermomicrobium roseum DSM 5159 | NC_011959.1 | 714587 | 714936 | - | - | minus |
M-Type | ||||||
Methanothermococcus okinawensis IH1 | NC_015636.1 | 713221 | 713458 | 713220 | 713457 | plus |
Methanocaldococcus vulcanius M7 | NC_013407.1 | 1569639 | 1569896 | 1569638 | 1569895 | plus |
Archaeoglobus fulgidus DSM 4304 | NC_000917.1 | 86045 | 86279 | 86044 | 86278 | plus |
Methanotorris igneus Kol 5 | NC_015562.1 | 1095229 | 1095484 | 1095228 | 1095483 | plus |
Methanocaldococcus jannaschii | NC_000909.1 | 643505 | 643762 | 643504 | 643761 | plus |
Methanococcus maripaludis C7 | NC_009637.1 | 992687 | 992925 | 992686 | 992924 | plus |
Methanococcus vannielii SB | NC_009634.1 | 1218466 | 1218705 | 1218465 | 1218704 | plus |
Methanocaldococcus fervens AG86 | NC_013156.1 | 1009728 | 1009985 | 1009727 | 1009984 | plus |
T-Type | ||||||
Caldivirga maquilingensis IC-167 | NC_009954.1 | 1690026 | 1690220 | - | - | plus |
Pyrobaculum aerophilum str. IM2 | NC_003364.1 | 542975 | 543185 | - | - | plus |
Pyrobaculum arsenaticum DSM 13514 | NC_009376.1 | 124150 | 124362 | - | - | plus |
Pyrobaculum calidifontis JCM 11548 | NC_009073.1 | 104104 | 104313 | - | - | minus |
Pyrobaculum islandicum DSM 4184 | NC_008701.1 | 1063572 | 1063783 | - | - | minus |
Pyrobaculum neutrophilum V24Sta | NC_010525.1 | 114806 | 115020 | - | - | minus |
Pyrobaculum oguniense TE7 | NC_016885.1 | 2039219 | 2039431 | - | - | minus |
Thermoproteus tenax Kra 1 | NC_016070.1 | 1226650 | 1226847 | - | - | minus |
Thermoproteus uzoniensis 768-20 | NC_015315.1 | 1810769 | 1810975 | - | - | minus |