Table 1 The basic chloroplast genome information of six Atractylodes species
From: Chloroplast genome variation and phylogenetic relationships of Atractylodes species
Characteristics | A. chinensis | A. coreana | A. lancea | A. macrocephala | A. japonica | A. carlinoides |
|---|---|---|---|---|---|---|
Raw data no. | 10,016,902 | 38,042,502 | 42,933,804 | 44,594,826 | 12,772,648 | 15,350,264 |
Mapped read no. | 373,164 | 262,561 | 1,142,990 | 1,462,514 | 68,040 | 116,137 |
Percent of chloroplast genome reads(%) | 3.73 | 0.69 | 2.66 | 3.28 | 0.53 | 0.76 |
Chloroplast genome coverage(X) | 365 | 257 | 1119 | 1431 | 67 | 114 |
Total size(bp) | 153,177 | 153,201 | 153,181 | 153,261 | 153,198 | 152,294 |
LSC length(bp) | 84,241 | 84,198 | 84,255 | 84,281 | 84,254 | 83,359 |
IR length(bp) | 25,147 | 25,148 | 25,146 | 25,153 | 25,140 | 25,132 |
SSC length(bp) | 18,642 | 18,707 | 18,634 | 18,674 | 18,664 | 18,671 |
Total genes | 113 | 113 | 113 | 113 | 113 | 113 |
Protein coding genes | 79 | 79 | 79 | 79 | 79 | 79 |
tRNA genes | 30 | 30 | 30 | 30 | 30 | 30 |
rRNA genes | 4 | 4 | 4 | 4 | 4 | 4 |
Overall GC content(%) | 37.70% | 37.70% | 37.70% | 37.70% | 37.70% | 37.70% |
GC content in LSC(%) | 35.80% | 35.80% | 35.80% | 35.80% | 35.80% | 35.90% |
GC content in IR(%) | 43.20% | 43.20% | 43.20% | 43.20% | 43.20% | 43.20% |
GC content in SSC(%) | 31.50% | 31.50% | 31.50% | 31.60% | 31.60% | 31.36% |
Accession number | MT834519 | MT834521 | MT834522 | MT834520 | MT834523 | MT834524 |