Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca

BMC Genomics

Table 1 Gene profile and organization of S. glauca mt genome

Group of genes	Gene name	Length	Start codon	Stop codon	Amino acid
NADH dehydrogenase	nad1	327	ATG	TGA	108
	nad2^a	915	ATG	TAA	304
	nad3	357	ATG	TAA	118
	nad4L	273	ATG	TAA	90
	nad5^a	1452	ATG	TGA	483
	nad7 ^a (2)	1092	ATG	TAG	363
	nad9	579	ATG	TAA	192
ATP synthase	atp1	1521	ATG	TAA	506
	atp4	597	ATG	TAG	198
	atp6	741	ATG	TAA	246
	atp8	480	ATG	TGA	159
	atp9	240	ATG	TGA	79
Cytochrome c biogenesis	ccmB	621	ATG	TGA	206
	ccmC	744	ATG	TAA	247
	ccmFC^a	1338	ATG	TAG	445
	ccmFN	1635	ATG	TGA	544
Cytochrome c oxidase	cox1	1575	ATG	TAA	524
	cox2^a	768	ATG	TAA	255
	cox3	798	ATG	TGA	265
Maturases	matR	1968	ATG	TAG	655
Ubiquinol cytochrome c reductase	cob	1182	ATG	TGA	393
Ribosomal proteins (LSU)	rpl5	555	ATG	TAA	184
Ribosomal proteins (SSU)	rps3	1680	ATG	TAA	559
	rps7	447	ATG	TAA	148
	rps12	381	ATG	TGA	126
Transport membrane protein	sdh4	294	ATG	TGA	97
Ribosomal RNAs	rrn5	119
	rrnS	1303
	rrnL (3)	1369
Transfer RNAs	trnA-UGC^a,b (2)	(73, 73)
	trnC-GCA	76
	trnE-UUC	72
	trnF-GAA (2)	(74, 74^b)
	trnG-GCC	74
	trnH-GUG^b	76
	trnI-GAU^b	79
	trnK-UUU (2)	(73,73)
	trnL-CAA	83
	trnM-CAU (4)	(74^b,76,76,76)
	trnN-GUU (3)	(74^b,74^b,74)
	trnP-UGG	90
	trnQ-UUG	72
	trnR-ACG ^b (2)	(75,75)
	trnS-GCU	91
	trnS-UGA	88
	trnV-GAC^b	72
	trnV-AAC^a	94
	trnW-CCA	74
	trnY-GUA	84

Notes: The numbers after the gene names indicate the duplication number. Lowercase a indicates the genes containing introns, and lowercase b indicates the cp-derived genes

ISSN: 1471-2164