RNA sequencing describes both population structure and plasticity-selection dynamics in a non-model fish

BMC Genomics

Table 2 Sacramento splittail (Pogonichthys macrolepidotus) sample sizes for individuals used in microsatellite data by region, capture location, and population reassignment

Region	Location	Cluster One	Cluster Two
San Pablo Bay	Napa River	62	56
	Petaluma River	169	117
	San Pablo Bay	3	0
Central Valley	Liberty Island	47	2
	Sacramento River	123	5
	San Joaquin River	124	11
Total		528	191

Region describes the overall region of capture, within which are rivers and capture sites at which fish were collected described by Location. Clusters One and Two describe population reassignment, where Cluster One is comprised of individuals across all six capture locations, while Cluster Two is comprised of individuals from capture locations primarily in San Pablo Bay. Throughout the present manuscript and with respect to microsatellite data, Cluster One is referred to as the Central Valley population and Cluster Two referred to as the San Pablo Bay population. In Adegenet, 75 principal components and two clusters were chosen for analysis

ISSN: 1471-2164