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Table 4 Immune-related DEGs

From: Transcriptome profiling of immune response to Yersinia ruckeri in spleen of rainbow trout (Oncorhynchus mykiss)

Gene ID

Type

Log2Fold

Putative homolog protein

KEGG pathway

Gene 10,807

up

12.0338

Interleukin-1 beta

ko04620: Toll-like receptor signaling pathway

Gene 24,642

up

10.6682

Interleukin-8

ko04060: Cytokine-cytokine receptor interaction

Gene 22,618

up

9.3812

Interleukin-8

ko04621: NOD-like receptor signaling pathway

Gene 4948

up

8.4892

Tumor necrosis factor

ko04150: mTOR signaling pathway

Gene 28,337

down

-2.5818

Mitogen-activated protein kinase 11

ko04010: MAPK signaling pathway

Gene 25,622

up

10.1562

Interleukin-6

ko04060: Cytokine-cytokine receptor interaction

Gene 34,157

up

9.0084

Interleukin-6

ko04060: Cytokine-cytokine receptor interaction

Gene 34,403

up

6.5996

Tumor necrosis factor

ko04060: Cytokine-cytokine receptor interaction

Gene 25,550

up

6.1699

Tumor necrosis factor

ko04060: Cytokine-cytokine receptor interaction

Gene 22,142

up

3.1333

Interferon

ko04060: Cytokine-cytokine receptor interaction

Gene 2178

down

-1.1786

NOD1

ko04621: NOD-like receptor signaling pathway

Gene 20,638

up

4.6720

Small cytokines (intecrine/chemokine)

ko04060: Cytokine-cytokine receptor interaction

newGene59965

down

-1.4640

Toll-like receptor 8

ko04620: Toll-like receptor signaling pathway

Gene 26,188

up

3.7094

Mab-21 protein

ko04623: Cytosolic DNA-sensing pathway

Gene 44,284

up

3.1644

Immunoglobulin V-set domain

ko04514: Cell adhesion molecules (CAMs)

Gene 23,752

up

2.9294

Phosphoinositide 3-kinase regulatory subunit

ko04012: ErbB signaling pathway

Gene 5944

up

2.4306

Interferon alpha/beta receptor

ko04060: Cytokine-cytokine receptor interaction