Table 1 Lysis-lysogeny related phams identified in the Stx phage genomes
Pham | # Phage | Function | Domains |
|---|---|---|---|
78 | 7 | Helix-turn-helix transcriptional regulator (Cro/C1-type HTH and peptidase s24 domains) | COG2932 |
87 | 4 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
115 | 3 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
124 | 2 | Repressor LexA | COG1974 |
237 | 15 | LexA family transcriptional regulator | pfam01726 |
257 | 116 | LexA family transcriptional regulator | COG1974 |
393 | 15 | Helix-turn-helix transcriptional regulator (Cro/C1-type HTH and peptidase s24 domains) | COG2932 |
507 | 22 | Transcriptional regulator Cro and CI | pfam01381 |
528 | 18 | Antitermination protein | pfam03589 |
603 | 3 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
629 | 35 | Phage antirepressor Ant | COG3561 |
641 | 13 | Regulatory protein CII | pfam05269 |
649 | 89 | Phage antirepressor Ant | COG3561 |
837 | 3 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
874 | 1 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
901 | 138 | Hypothetical protein (CII regulatory) | pfam05269 |
907 | 5 | Transcriptional regulator Cro superfamily | COG4197 |
921 | 22 | Helix-turn-helix transcriptional regulator (Cro/C1-type HTH and peptidase s24 domains) | COG2932 |
922 | 9 | HTH-type transcriptional regulator RdgA (Cro/C1-type HTH and peptidase s24 domains) | COG2932 |
968 | 1 | Antiterminator Q | pfam06530 |
978 | 29 | Antiterminator Q protein | pfam06530 |
984 | 13 | DUF1133 family protein (Q antiterminator HHPred) | cl29970 |
1009 | 8 | Cro/Cl family transcriptional regulator | COG4197 |
1010 | 1 | Rha family transcriptional regulator Cro superfamily | COG4197 |
1059 | 7 | LexA family transcriptional repressor | COG1974 |
1199 | 1 | Transcriptional regulator lambda repressor-like DNA-binding domain | COG3423 |
1204 | 2 | LexA family transcriptional regulator | COG1974 |
1204 | 2 | LexA family transcriptional regulator | COG1974 |
1318 | 11 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
1392 | 1 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
1422 | 216 | Late gene regulator Q | pfam06530 |
1424 | 7 | Antitermination protein | pfam06530 |
1457 | 2 | LexA family transcriptional regulator | COG1974 |
1550 | 1 | Antiterminator Q | pfam06323 |
1642 | 2 | Transcriptional regulator Cro protein | pfam14549 |
1673 | 3 | Helix-turn-helix transcriptional regulator Cro and CI | pfam01381 |
1763 | 64 | Helix-turn-helix transcriptional regulator (Cro/C1-type HTH and peptidase s24 domains) | COG2932 |
1266 | 1 | Phage antirepressor Ant | pfam03374 |
1639 | 16 | Putative antirepressor | pfam03374 |
1668 | 1 | Phage antirepressor Ant | COG3561 |