Metagenomic diagnosis of severe psittacosis using multiple sequencing platforms

BMC Genomics

Table 1 Top ten species in three sample types by BGISEQ-500

Top ten species	Number of unique reads(n)
Top ten species	BALF	Sputum	Blood
Chlamydia psittaci^a	39,385	30,320	14,478
Propionibacterium acnes^a	64	59	171
Stenotrophomonas maltophilia^a	54	102	150
Chlamydia abortus	46	23	/
Klebsiella pneumoniae^a	29	22	24
Salmonella enterica^a	27	56	43
Pseudomonas aeruginosa^a	20	16	29
Moraxella osloensis^a	17	9	26
Micrococcus luteus	10	8	/
Escherichia coli^a	8	10	50
Enterococcus faecium	/	/	11
Staphylococcus epidermidis	/	/	11

^aindicates species that were detected in all three sample types. “/” indicates species that were not among the top ten species of the corresponding sample

ISSN: 1471-2164