From: Determination of genetic effects and functional SNPs of bovine HTR1B gene on milk fatty acid traits
SNP name | Location | Position (UMD 3.1.1) | EVA no. | Genotype | NO. | Frequency | Allele | Frequency |
---|---|---|---|---|---|---|---|---|
g.17307103A > T | 5′ flanking region | Chr9: 17307103 | rs207969357 | AA | 481 | 0.4621 | A | 0.6830 |
TT | 100 | 0.0961 | T | 0.3170 | ||||
TA | 460 | 0.4419 | Â | Â | ||||
g.17305206 T > G | 5′ UTR | Chr9: 17305206 | rs476055046 | TT | 651 | 0.6242 | T | 0.8121 |
GG | 0 | 0.0000 | G | 0.1879 | ||||
GT | 392 | 0.3758 | Â | Â | ||||
g.17303761C > T | 5′ UTR | Chr9: 17303761 | rs133683693 | CC | 113 | 0.1088 | C | 0.3503 |
TT | 424 | 0.4081 | T | 0.6497 | ||||
CT | 502 | 0.4832 | Â | Â | ||||
g.17303383G > T | Exon-1 | Chr9: 17303383 | rs209984404 | GG | 504 | 0.4846 | G | 0.6986 |
TT | 91 | 0.0875 | T | 0.3014 | ||||
GT | 445 | 0.4279 | Â | Â | ||||
g.17303042C > G | Exon-1 | Chr9: 17303042 | rs208945882 | CC | 499 | 0.4897 | C | 0.6977 |
GG | 96 | 0.0942 | G | 0.3023 | ||||
CG | 424 | 0.4161 | Â | Â | ||||
g.17302291C > G | 3′ UTR | Chr9: 17302291 | rs136136524 | CC | 279 | 0.2680 | C | 0.5259 |
GG | 225 | 0.2161 | G | 0.4741 | ||||
CG | 537 | 0.5159 | Â | Â | ||||
g.17302078G > T | 3′ UTR | Chr9: 17302078 | rs135063494 | GG | 502 | 0.4818 | G | 0.6972 |
TT | 91 | 0.0873 | T | 0.3028 | ||||
GT | 449 | 0.4309 | Â | Â | ||||
g.17301689 T > C | 3′ UTR | Chr9: 17301689 | rs379078023 | CC | 103 | 0.1012 | C | 0.3089 |
TT | 492 | 0.4833 | T | 0.6911 | ||||
CT | 423 | 0.4155 | Â | Â | ||||
g.17301647G > T | 3′ UTR | Chr9: 17301647 | rs109548495 | GG | 115 | 0.1103 | G | 0.3514 |
TT | 425 | 0.4075 | T | 0.6486 | ||||
GT | 503 | 0.4823 | Â | Â | ||||
g.17299803A > G | 3′ UTR | Chr9: 17299803 | rs208790360 | AA | 499 | 0.4854 | A | 0.6989 |
GG | 90 | 0.0875 | G | 0.3011 | ||||
AG | 439 | 0.4270 | Â | Â | ||||
g.17298882A > G | 3′ flanking region | Chr9: 17298882 | rs380460000 | AA | 2 | 0.0038 | A | 0.5019 |
GG | 0 | 0.0000 | G | 0.4981 | ||||
AG | 523 | 0.9962 | Â | Â | ||||
g.17296725C > T | 3′ flanking region | Chr9: 17296725 | rs208087947 | CC | 503 | 0.4846 | C | 0.6985 |
TT | 91 | 0.0877 | T | 0.3015 | ||||
CT | 444 | 0.4277 | Â | Â | ||||
g.17296695 T > C | 3′ flanking region | Chr9: 17296695 | rs133617481 | CC | 90 | 0.0872 | C | 0.2994 |
TT | 504 | 0.4884 | T | 0.7006 | ||||
CT | 438 | 0.4244 | Â | Â |