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Table 1 Genes which expression pattern (DGE or DTU) has been altered by molt in at least one tissue among the epithelial cluster and whose function was putatively related to appendages

From: The transcriptomic blueprint of molt in rooster using various tissues from Ginkkoridak (Korean long-tailed chicken)

Gene ID

Gene description

n

Cw

Ea

Ss

Ts

ENSGALG00000033381

768,880 KRT75L1 keratin, type II cytoskeletal 75-like 2

2

 

5.23

6.93

 

ENSGALG00000024136

beta-keratin

1

  

−2.42

 

ENSGALG00000026964

claw keratin-like

1

  

11.72

 

ENSGALG00000027475

claw keratin-like

1

  

13.27

 

ENSGALG00000047111

claw keratin-like

1

  

11.62

 

ENSGALG00000048696

claw keratin-like

1

  

10.46

 

ENSGALG00000052035

claw keratin-like

1

  

11.18

 

EDBETA

epidermal differentiation protein beta

3

 

6.86

8.68

7.53

EDCH3

epidermal differentiation protein containing cysteine histidine motifs 3

1

   

21.20

ENSGALG00000047689

epidermal differentiation protein starting with MTF motif 3-like

2

  

12.86

24.84

ENSGALG00000026754

feather keratin 1-like

2

1.80

 

5.62

 

ENSGALG00000048841

feather keratin 1-like

2

  

11.93

6.63

ENSGALG00000051914

feather keratin 1-like

2

 

22.16

13.84

 

ENSGALG00000026987

feather keratin 1-like

1

  

27.12

 

ENSGALG00000027167

feather keratin 1-like

1

  

10.21

 

ENSGALG00000028843

feather keratin 1-like

1

  

15.82

 

ENSGALG00000038424

feather keratin 1-like

1

  

11.03

 

ENSGALG00000047672

feather keratin 1-like

1

  

15.56

 

ENSGALG00000049852

feather keratin 1-like

1

 

−6.52

  

ENSGALG00000050510

feather keratin 1-like

1

  

23.71

 

ENSGALG00000053111

feather keratin 1-like

1

  

13.49

 

ENSGALG00000054492

feather keratin 1-like

1

  

13.53

 

ENSGALG00000047809

feather keratin 2-like

1

 

23.98

  

ENSGALG00000027640

feather keratin 3-like

1

  

27.76

 

ENSGALG00000046999

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

23.57

 

ENSGALG00000047404

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

25.64

 

ENSGALG00000047476

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

23.82

 

FK27

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

23.13

 

ENSGALG00000049685

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

24.93

 

ENSGALG00000050377

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

23.94

 

ENSGALG00000052341

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

22.90

 

FK27

feather keratin Cos1–1/Cos1–3/Cos2–1-like

1

  

24.61

 

F-KER

feather keratin I

1

  

13.92

 

FBN3

fibrillin 3

2

 

5.35

5.90

 

ENSGALG00000054020

Gallus gallus feather keratin 3-like (LOC100859191), mRNA.

1

  

15.09

 

ENSGALG00000024138

keratin

1

  

11.85

 

ENSGALG00000028374

keratin

1

  

12.12

 

ENSGALG00000039987

keratin A

1

  

13.66

 

KRTAP10–4

keratin associated protein 10–4

1

  

11.51

 

ENSGALG00000034054

keratin, type I cytoskeletal 42-like

1

 

5.81

  

ENSGALG00000041858

keratin, type I cytoskeletal 42-like

1

  

2.02

 

ENSGALG00000044875

keratin, type II cytoskeletal 75-like 4

2

  

10.91

8.13

ENSGALG00000053966

keratin-associated protein 10–4-like

2

 

23.75

11.69

 

EDMPN2

keratin-associated protein 5–1-like

1

  

13.16

 

ENSGALG00000054721

keratin-associated protein 9–1-like

1

  

27.22

 

ENSGALG00000029144

scale keratin-like

3

 

8.25

7.71

6.47

ENSGALG00000033213

scale keratin-like

3

 

7.56

11.24

8.58

ENSGALG00000034308

scale keratin-like

2

  

13.75

10.41

ENSGALG00000041483

scale keratin-like

2

  

15.21

9.90

ENSGALG00000046792

scale keratin-like

2

  

9.46

22.93

ENSGALG00000052180

scale keratin-like

2

  

10.86

23.60

ENSGALG00000040622

scale keratin-like

1

  

10.92

 

ENSGALG00000047022

scale keratin-like

1

  

9.32

 

ENSGALG00000049037

scale keratin-like

1

  

13.41

 

ENSGALG00000053010

scale keratin-like

1

  

11.98

 

ENSGALG00000054186

scale keratin-like

1

  

9.15

 

ENSGALG00000043660

trichohyalin-like

1

  

10.57

 

ENSGALG00000047783

uncharacterized LOC107055273

2

 

22.99

25.70

 

MLPH

melanophilin

1

  

6.40

 

ENSGALG00000006708

collagen type XXIII alpha 1 chain

1

  

2.42

 

CRH

corticotropin releasing hormone

1

  

5.70

 

PTHLH

parathyroid hormone like hormone

1

  

4.16

 

PER2

period circadian clock 2

1

 

1.61

  

CRY2

cryptochrome circadian regulator 2

2

 

1.16

  
  1. The values are expressed as the log2 fold change of FDR. (n: number of tissues in which the gene was altered, Cw craw, To tongue, Ea earlobe, Ss shin skin, Ms. muscle skin and Ts: tail skin)