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Table 5 The identified variable fragments located in assembled E. coli and K. pneumoniae genomes scaffolds with their size and number of clusters obtained by phylogenetic analysis

From: Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping

Name of variable fragment

Number of variable fragment

Variable fragment length [bp]

Number of clusters

EC_01

11

4762

11

KP_01

14

1346

4

KP_02

140

12

4

KP_03

146

13

4

KP_04

153

21

4

KP_05

154

26

4