Skip to main content

Table 3 Variants with moderate impact on protein function described in all five tissues

From: Detection of potential functional variants based on systems-biology: the case of feed efficiency in beef cattle

Symbol

ID Genes

Variant Name

Protein Position

SNP

Protein Alteration

COL4A1

ENSBTAG00000012849

ENSBTAT00000076567

932

C

T/A

COL4A1

ENSBTAG00000012849

ENSBTAT00000035335

1013

C

T/A

ECHS1

ENSBTAG00000017710

ENSBTAT00000079039

171

C

F/L

ECHS1

ENSBTAG00000017710

ENSBTAT00000044947

106

C

F/L

ECHS1

ENSBTAG00000017710

ENSBTAT00000082162

155

C

F/L

ERCC5

ENSBTAG00000014043

ENSBTAT00000046365

1132

C

V/A

ERCC5

ENSBTAG00000014043

ENSBTAT00000046365

1132

G

P/A

ETS2

ENSBTAG00000009214

ENSBTAT00000012144

231

C

I/L

ETS2

ENSBTAG00000009214

ENSBTAT00000074510

231

C

I/L

FAM207A

ENSBTAG00000017010

ENSBTAT00000022620

150

C

W/R

FAM207A

ENSBTAG00000017010

ENSBTAT00000022620

155

G

P/R

IRF3

ENSBTAG00000006633

ENSBTAT00000031869

162

C

N/K

MTCH2

ENSBTAG00000018742

ENSBTAT00000024956

82

C

I/V

MTCH2

ENSBTAG00000018742

ENSBTAT00000084129

82

C

I/V

NBN

ENSBTAG00000013225

ENSBTAT00000017598

709

G

M/V

NBN

ENSBTAG00000013225

ENSBTAT00000017598

693

T

P/S

NBN

ENSBTAG00000013225

ENSBTAT00000017598

686

C

V/L

NUBP1

ENSBTAG00000009560

ENSBTAT00000012576

224

A

V/I

OSGIN2

ENSBTAG00000013678

ENSBTAT00000018177

245

C

N/D

RPL7L1

ENSBTAG00000018478

ENSBTAT00000005214

121

C

G/R

RPL7L1

ENSBTAG00000018478

ENSBTAT00000073451

108

C

G/R

RPL7L1

ENSBTAG00000018478

ENSBTAT00000005214

48

A

R/K

RPL7L1

ENSBTAG00000018478

ENSBTAT00000073451

35

A

R/K

RPP30

ENSBTAG00000002973

ENSBTAT00000003871

252

AGC

E/EA

RPP30

ENSBTAG00000002973

ENSBTAT00000084821

250

AGC

E/EA

SCAND1

ENSBTAG00000005573

ENSBTAT00000007322

75

T

V/I

UTP3

ENSBTAG00000009310

ENSBTAT00000012263

305

A

R/K

  1. Twenty-seven functional variants with moderate impact associated with feed efficiency in Nellore cattle presented in five tissues studied (liver, adrenal, hypothalamus, pituitary glands, and muscle). These variants are non-disruptive that can alter the effectiveness of proteins