Fig. 2

A Differential occurrence of the genes in MAG-Pseudomonas with Pseudomonas chlororaphis subsp. aurantiaca strain ARS 38, Pseudomonas sp. DR208 and Pseudomonas sp. DR48. The darker the highlight represents higher occurrences in the MAG-Pseudomonas. MAG-Pseudomonas showed a high occurrence of nitrate reductase and glutamate synthase in the MAG-Pseudomonas genome when compared with the other genomes. B Nitrogen metabolism pathways in MAG-Pseudomonas were detected based on a comparative pathway tool in PATRIC. MAG-Pseudomonas had 79 genes annotated to have enzyme classification numbers involved in the nitrogen metabolism pathway with 100% coverage. Nitrate reductase was found to be present in the principal nitrogen metabolism pathway, along with the denitrification pathway. Box numbers represent the Enzyme Commission number (E.C. number). The green colored boxes denote the annotated enzymes. The block comparison nitrate reductase corresponds to the dissimilatory nitrate reduction. The enzyme that the MAG-Pseudomonas has is the assimilatory nitrate reductase, so that could be identified in the nitrate assimilation block. The block nitrate assimilation corresponds to the assimilatory nitrate reductase. KEGG nitrogen metabolism pathways [72] were downloaded from PATRIC web portal. Copyright permission for use and modification were obtained from KEGG