Non-negative low-rank representation based on dictionary learning for single-cell RNA-sequencing data analysis

BMC Genomics

Table 4 The percentage of specific ARI values of clustering methods

methods	Treutlein	Ting	Deng	Pollen	Goolam	Engel	Kolod	Darmanis	Average
SSC	52.42	97.84	38.04	92.92	44.41	52.02	49.30	52.02	59.87
SIMLR	51.14	98.03	45.65	94.15	29.91	66.82	89.60	39.82	64.39
SC3	70.56	100.00	42.21	90.45	68.74	75.70	93.06	74.46	76.89
SNN-Cliq	26.13	55.37	54.26	35.24	20.46	13.52	3.12	1.53	26.20
Corr	59.19	63.02	47.53	75.53	30.46	43.77	69.2	61.83	56.32
MPSSC	61.17	97.84	47.83	93.28	40.20	48.21	83.06	45.93	64.69
SinNLRR	64.19	89.43	47.06	90.51	90.97	65.33	72.91	60.57	72.62
ScLCA	71.57	44.95	36.27	87.29	49.14	26.38	83.40	81.76	60.09
Seurat	62.50	75.63	54.96	82.32	58.21	70.87	72.32	88.30	70.63
CIDR	93.29	-	43.01	81.39	-	18.52	-	89.77	65.19
RaceID	69.62	-	52.09	83.83	-	49.66	-	50.78	61.19
Spectrum	42.23	56.78	31.34	89.24	52.00	09.10	43.27	36.46	45.05
SHARP	71.39	82.08	64.42	42.12	93.87	69.99	84.42	94.88	75.39
DLNLRR	84.20	100.00	51.84	93.52	98.08	79.01	97.62	72.14	84.55

ISSN: 1471-2164