Table 3 The SNPs associated with quality traits (P < 10^–4)

Protein

PZE_103041051

3

G/A

3.04

36,763,501

9.01E-10

2015LY

SYN33251

4

C/T

4.03

16,339,439

1.77E-09

2015QZ

PZE_106018579

6

G/T

6.01

37,197,726

1.76E-05

2015QZ

SYN17423

8

G/A

8.05

134,818,226

3.46E-10

2015QZ

PZE_108135907

8

C/G

8.09

174,418,959

5.62E-06

2017JZ

PZE_109019092

9

A/G

9.02

19,190,493

3.37E-05

2017JZ

PZE_109032161

9

C/G

9.03

37,880,373

1.05E-15

2017JZ

SYN11748

10

C/T

10.07

146,025,814

5.02E-05

2017JZ

Starch

PZE_101130213

1

A/C

1.05

166,556,661

4.11E-06

2017JZ

PZE_104013159

4

A/G

4.02

11,329,078

4.29E-06

2017JZ

PZE_105086878

5

A/T

5.04

110,514,145

1.05E-05

2017JZ

SYN3414

6

G/A

6.01

9,182,861

1.72E-05

2015QZ

PZE_106054189

6

T/C

6.04

105,019,334

2.59E-05

2016JZ

PZE_106067078

6

A/G

6.04

119,903,632

5.39E-07

2015QZ

PZE_106054189

6

T/C

6.04

105,019,334

6.92E-06

2015LY

PZE_107065016

7

C/G

7.02

116,395,949

1.58E-06

2015LY

PZE_108005661

8

C/T

8.01

5,774,110

2.18E-05

2015QZ

PZE_108028552

8

G/C

8.03

31,305,636

7.64E-06

2015LY

PZE_109032161

9

C/G

9.03

37,880,373

1.55E-05

2015LY

Oil

SYN38947

1

A/G

1.11

298,011,612

9.49E-05

2015QZ

PZE_104087424

4

G/T

4.06

161,347,637

4.54E-05

2017JZ

PZE_105086878

5

A/T

5.04

110,514,145

1.30E-07

2017JZ

SYN3414

6

G/A

6.01

9,182,861

1.05E-06

2015QZ

PZE_106054189

6

T/C

6.04

105,019,334

2.59E-05

2016JZ

PZE_106067078

6

A/G

6.04

119,903,632

1.74E-05

2015QZ

PZE_108091085

8

G/T

8.06

146,812,014

2.18E-05

2015QZ