Table 1 Genomic features of twenty-eight L. parabuchneri strains were analyzed in this study
Strain | Isolation Source | Accession Number | Sequencing Technology | Size (Mb) | GC (%) | CDS | tRNA | rRNA | Intact Prophages | Plasmid |
|---|---|---|---|---|---|---|---|---|---|---|
DSM 15352 | NA | GCA_001437335.1 | Illumina MiSeq; Illumina HiSeq | 2.6 | 43.5 | 2434 | 54 | 7 | 0 | 1 |
DSM 5707 | saliva | GCA_001435315.1 | Illumina MiSeq; Illumina HiSeq | 2.57 | 43.4 | 2386 | 54 | 3 | 0 | 1 |
FAM21731 | Emmental | GCA_001922025.1 | PacBio | 2.73 | 43.5 | 2566 | 62 | 15 | 4 | 2 |
FAM21809 | Tete de Moine | GCA_002095795.1 | Illumina HiSeq | 2.57 | 43.5 | 2462 | 60 | 9 | 3 | 0 |
FAM21823 | Mont Soleil | GCA_002095615.1 | Illumina HiSeq | 2.67 | 43.3 | 2539 | 60 | 7 | 1 | 1 |
FAM21829 | Emmental | GCA_002095645.1 | Illumina HiSeq | 2.74 | 43.3 | 2616 | 60 | 7 | 2 | 1 |
FAM21834 | Tilsit | GCA_002095655.1 | Illumina HiSeq | 2.76 | 43.3 | 2663 | 60 | 7 | 2 | 1 |
FAM21835 | Tilsit | GCA_002095755.1 | Illumina HiSeq | 2.67 | 43.5 | 2527 | 63 | 12 | 4 | 0 |
FAM21838 | Swiss Alpine cheese | GCA_002095635.1 | Illumina HiSeq | 2.54 | 43.5 | 2419 | 59 | 8 | 0 | 0 |
FAM23163 | Tete de Moine | GCA_002095835.1 | Illumina HiSeq | 2.57 | 43.5 | 2386 | 60 | 7 | 1 | 0 |
FAM23164 | Tete de Moine | GCA_002095845.1 | Illumina HiSeq | 2.7 | 43.3 | 2626 | 60 | 9 | 2 | 0 |
FAM23165 | Tete de Moine | GCA_002095695.1 | Illumina HiSeq | 2.71 | 43.3 | 2618 | 60 | 9 | 3 | 0 |
FAM23166 | Tete de Moine | GCA_002095725.1 | Illumina HiSeq | 2.71 | 43.3 | 2628 | 60 | 7 | 3 | 0 |
FAM23168 | Tete de Moine | GCA_002095715.1 | Illumina HiSeq | 2.57 | 43.5 | 2385 | 60 | 7 | 1 | 0 |
FAM23169 | Tete de Moine | GCA_002095825.1 | Illumina HiSeq | 2.8 | 43.2 | 2675 | 60 | 8 | 4 | 1 |
FAM23279 | milk | GCA_002095895.1 | Illumina HiSeq | 2.61 | 43.3 | 2478 | 59 | 9 | 0 | 0 |
FAM23280 | milk | GCA_002095905.1 | Illumina HiSeq | 2.56 | 43.4 | 2419 | 59 | 8 | 0 | 0 |
FAM23281 | milk | GCA_002095915.1 | Illumina HiSeq | 2.62 | 43.3 | 2479 | 59 | 8 | 2 | 0 |
FAM23282 | milk | GCA_002095765.1 | Illumina HiSeq | 2.61 | 43.3 | 2488 | 59 | 8 | 2 | 0 |
IPLA 11117 | cheese | GCA_001687155.1 | Illumina HiSeq | 2.77 | 43.2 | 2624 | 58 | 7 | 1 | 0 |
IPLA 11122 | cheese | GCA_001677035.1 | Illumina HiSeq | 2.56 | 43.5 | 2398 | 58 | 7 | 2 | 0 |
IPLA 11150 | cheese | GCA_001687145.1 | Illumina HiSeq | 2.69 | 43.3 | 2544 | 58 | 7 | 1 | 1 |
IPLA11125 | cheese | GCA_019266025.1 | Illumina | 2.58 | 43.5 | 2396 | 58 | 7 | 1 | 0 |
IPLA11129 | cheese | GCA_019266005.1 | Illumina | 2.58 | 43.5 | 2396 | 60 | 7 | 1 | 1 |
IPLA11151 | cheese | GCA_019265985.1 | Illumina | 2.66 | 43.4 | 2504 | 60 | 7 | 1 | 1 |
KEM | KEM complex | GCA_014879295.1 | Illumina GAIIx | 2.53 | 43.6 | 2325 | 60 | 15 | 1 | 0 |
NBRC 107865 | NA | GCA_001591885.1 | Illumina HiSeq 1000 | 2.55 | 43.4 | 2380 | 36 | 3 | 0 | 1 |
NSMJ16 | Makgeolli (Korean traditional alcoholic beverage) | GCA_014905035.1 | Illumina HiSeq; PacBio RSII | 2.61 | 43.5 | 2413 | 61 | 15 | 0 | 3 |