Table 2 amica format. Column names of amica’s output format. All intensities are log2 transformed
From: amica: an interactive and user-friendly web-platform for the analysis of proteomics data
Column name | Description |
|---|---|
Majority.protein.IDs | Unique Protein ID |
Gene.names | Gene names |
spectraCount | Total MS MS count |
razorUniqueCount | Total Razor + unique peptides |
razorUniqueCount.<sample> | Razor + unique peptides per sample |
iBAQ_<sample> | iBAQ intensity per sample |
RawIntensity_<sample> | Raw Intensity per sample |
LFQIntensity_<sample> | LFQ Intensity per sample |
ImputedIntensity_<sample> | Normalized and imputed intensity per sample |
Potential.contaminant | Potential contaminants have a “+” in this column |
P.Value_ | p-value for a pairwise group comparison, e.g P.Value_group1__vs__group2 |
adj.P.Val_ | adj. p-value for a pairwise group comparison, e.g adj.P.Val_group1__vs__group2 |
logFC_ | log2 fold change for a pairwise group comparison, e.g logFC_group1__vs__group2 |
AveExpr_ | Avg. intensity for a pairwise group comparison, e.g AveExpr_group1__vs__group2 |
quantified | Filtered proteins contain a “+” in this column |