Table 2 The sequencing results from ChIP-seq
Sample | RawReads | CleanReads | CleanBases |
|---|---|---|---|
In_0119 | 130,331,912 | 120,699,622 | 17,133,390,386 |
In_0226 | 150,631,522 | 135,910,486 | 19,191,709,878 |
In_BQ3 | 110,756,256 | 96,622,958 | 14,027,721,777 |
In_DQ | 84,770,450 | 80,465,832 | 11,423,743,392 |
In_GND7 | 99,378,278 | 85,323,580 | 12,349,042,608 |
In_NC3 | 85,717,146 | 76,974,628 | 11,144,732,567 |
In_NC6 | 95,183,346 | 85,590,522 | 12,406,825,955 |
In_XL | 98,977,998 | 93,442,800 | 13,212,397,069 |
IP_0119_H3K27ME3 | 120,120,702 | 112,937,754 | 15,975,609,893 |
IP_0119_H3K4ME3 | 103,402,144 | 95,106,898 | 13,445,058,497 |
IP_0226_H3K27ME3 | 138,540,060 | 126,498,530 | 17,784,286,347 |
IP_0226_H3K4ME3 | 144,379,848 | 131,660,326 | 18,556,727,187 |
IP_BQ3_H3K27ME3 | 99,171,422 | 87,892,364 | 12,712,914,671 |
IP_BQ3_H3K4ME3 | 87,163,154 | 75,060,996 | 10,758,236,629 |
IP_DQ_H3K27ME3 | 109,696,894 | 103,489,644 | 14,706,537,230 |
IP_DQ_H3K4ME3 | 88,993,448 | 84,378,304 | 11,940,270,399 |
IP_GND7_H3K27ME3 | 125,591,094 | 110,606,552 | 15,736,874,897 |
IP_GND7_H3K4ME3 | 98,072,560 | 85,838,950 | 12,342,566,744 |
IP_NC3_H3K27ME3 | 84,343,530 | 75,903,352 | 10,976,121,973 |
IP_NC3_H3K4ME3 | 80,751,230 | 72,863,388 | 10,543,634,758 |
IP_NC6_H3K27ME3 | 83,565,116 | 75,700,530 | 10,969,572,587 |
IP_NC6_H3K4ME3 | 84,149,000 | 75,787,454 | 10,950,362,320 |
IP_XL_H3K27ME3 | 91,925,772 | 87,490,906 | 12,416,299,085 |
IP_XL_H3K4ME3 | 88,750,186 | 84,198,968 | 11,895,135,311 |
Total | 2,484,363,068 | 2,260,445,344 | 322,599,772,160 |