Co-expression network | Genes belonging to the co-expression network | ||
---|---|---|---|
Transcription factor-related genes | Auxin-related genes | Secondary metabolism-related genes | |
Leaf | SERK1 | Auxin Response Factor 9 (ARF9) Small Auxin Up RNA 32 (SAUR32) SAUR36 SAUR71 Auxin Binding Protein 19 (ABP19) | Phenylalanine Ammonia Lyase 1 (PAL1) PAL2 PAL3 4-cinnamoyl CoA ligase 1 (4CL1) 4CL2 Chalcone Synthase (CHS) Caffeine Synthase (DXMT) Caffeoyl Shikimate Esterase (CSE) Cinnamoyl - CoAÂ Reductase 1 (CCR1) CCR2 Caffeic acid O-MethylTransferase (COMT1) |
Dedifferentiation | SERK2 CLV3 | AUX12 AUX15 AUX22 IAA4 IAA9 IAA13 IAA14 IAA28 IAA29 PIN-FORMED1 (PIN1) PIN2 PIN3 SAUR72 | Xanthosine Methyltransferase 1 (XMT1) MXMT CCR1 COMT1 Caffeoyl-CoA-O-MethylTransferase 1 (CCOMT1) HydroxyCinnamoyl-CoA shikimate/quinate hydroxycinnamoyl Transferase (HCT) |
Embryogenic callus | ABI3 BBM WUS WOX2 AGL15 LEC1 | ARF4 ARF5 IAA33 TAA1 | Â |
Redifferentiation | FUS3 | ARF4 TAA1 YUCCA4 SAUR72 PIN1 | CHS XMT1 CSE CCR1 COMT1 Hydroxycinnamoyl-CoA Quinate hydroxycinnamoyl Transferase (HQT) Cinnamyl-Alcohol Dehydrogenase (CAD) |