Table 2 Transcriptomic markers characterizing the different developmental phases of coffee somatic embryogenesis
Transcriptomic markers | Developmental phases | ||||||
|---|---|---|---|---|---|---|---|
Leaf cells | Cells in dedifferentiation | Primary callus cells | Embryogenic cells | Embryogenic cell clusters | Cells in redifferentiation | Embryonic cells | |
Transcription factor-related genes | SERK1 | SERK2 CLV3 | Â | BBM ABI3 LEC1 AGL15 WOX2 WUS | Â | FUS3 | FUS3 |
Auxin-related genes | Â | AUX/IAA | Â | ARF5 | YUCCA4 | YUCCA4 | Â |
Cytokinin related genes | Â | Â | Â | ARR10 | Â | Â | ARR10 |
ABA-related genes | Â | Â | Â | Â | Â | Â | ABI5 |
Ethylene-related genes | Â | Â | ACS7 | Â | Â | Â | Â |
Secondary metabolism-related genes | PAL CHS 4CL DXMT | Â | Â | Â | Â | CHS 4CL CAD HQT | CHS 4CL CAD HQT XMT |